Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2057 239 7e-58 seq2146 138 2e-27 seq56 123 4e-23 >seq2057 Length=22280 Score = 239 bits (264), Expect = 7e-58 Identities = 397/562 (71%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||| | || ||| |||| || Sbjct 16973 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 16914 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||||| | |||| || | |||||| | ||||| Sbjct 16913 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCAGC 16854 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | |||||||| || | || || || || |||||||| || || || || | Sbjct 16853 CACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCGG 16794 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 || || ||| || || | |||||| ||| ||||| ||||| ||||| ||||| Sbjct 16793 TTTAGTTCG-GAGGTG--CAAGCAGCAGAGGC-TCGATGCTTCTACGGCTTCCAGATCAT 16738 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | |||||||| | |||||| || || |||| ||||||||||| || Sbjct 16737 GATGGAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCC 16678 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAA 125370 |||||| | || |||||| | || || || || | || ||| | | |||| Sbjct 16677 TCAGCAACGCGAGTAC---CTCTTTGATGCCATGGAGACCATCCCTGTCGTCAAGCAAAA 16621 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||| | |||| || ||||||||| | ||| | | || | | || || || || Sbjct 16620 -GGCCGAGTGGGCCATGCGGTGGATCAACGACACCGAATCGACCTTTGCTGAGCGATTGA 16562 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || ||||||||||| |||||||||||||| || || ||||| ||||||| |||| Sbjct 16561 TCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGC 16502 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| ||||||||||| || ||| | |||||| | || ||||||| Sbjct 16501 TCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACG 16442 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 |||| || ||| |||||||| Sbjct 16441 AGGGTCTGCACACCGACTTTGC 16420 >seq2146 Length=21837 Score = 138 bits (152), Expect = 2e-27 Identities = 314/464 (68%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| ||||| Sbjct 15965 CAGGGTGGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGAC 16024 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | | || ||| ||| || |||| || ||| | || Sbjct 16025 GTCTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAG 16084 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC-AAC--GACGGTGGC 97052 | || || || || ||| | || || |||||||||||||| ||| ||| |||| | Sbjct 16085 CTCTTCTACGCCCTTTGGATTCCCGACTTGTTCATGAAGCGAGTCGAACAGAACGGAG-- 16142 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | ||| || |||||||||| || |||||||| |||| || || || || Sbjct 16143 -AGTGGTCGCTCATGTGCCCCGCTGAGTGCCCCGGTCTTGCCGACGTCTATGGTGAGGAA 16201 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGC 97171 || |||||| ||| | ||||||| ||||| || || ||| ||| | || Sbjct 16202 TTCGAGGCCCTCTACGAGAAGTACGAGCGCGAGGGTCGTGCTCGCCGCACG-GTCAAGGC 16260 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | ||| | || ||| ||| |||||||| | || | ||| | Sbjct 16261 TC-AGAAGCTCTGGTACGCCGTTCTGGAGGCCCAGACGGAGACTGGCAACCCTTTCATGC 16319 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 | |||||||| | | || ||||| ||||| || | |||||||||||| || Sbjct 16320 TTTACAAGGACGCTGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGAACT 16379 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || || |||||||| || |||||||| | ||||||||||| Sbjct 16380 CTAACCTTTGCACGGAGATCATAGAGTACAGCGCTCCGGACGAG 16423 >seq56 Length=8293 Score = 123 bits (136), Expect = 4e-23 Identities = 399/615 (65%), Gaps = 26/615 (4%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||||| ||||| || ||||| | ||| |||||||| || || || ||| Sbjct 1512 TTGCGGAAGAAGATGAGCCCGGCACGGGGACCGCGGAGCGTCTTGTGGGTCGTGGTCGTC 1571 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-AT 127220 |||| ||| || ||||| |||||| | |||| | | | || | | || ||| | || Sbjct 1572 ACAACGTCGCAGTACTCGAAGGGGTTCGCGTTGACCTGGGCAGCGA-CGAGTCCGGAGAT 1630 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||| || || ||| ||| || | ||| | || | ||| ||||| || || | Sbjct 1631 GTGGGCCATGTCGCACATGAGGAGCGAGTTGTTCGCCTTGGCGATCTCGGAGAGACGCTT 1690 Query 127281 ATAGTCCAAGCGCCGAGGATAG--CAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 |||||| || || || ||| | || |||| ||||| ||| | || | | Sbjct 1691 GTAGTCCCAGTCGCGCGGGTAGGCCGACCCA--CCGGAGATGATGAGCTTGGGGCGGTAG 1748 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || | || ||||||| || || | ||||||| ||| || || || | |||||| Sbjct 1749 AGGTCCGCGTTCTCGGCGAGCTTCTCGTAGTCGAGGAGACCCGTAGTGGGGTTGACCTTG 1808 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT----------GCGGAATC- 127447 ||||| | | | ||| ||| || | ||| | ||| | | || | Sbjct 1809 TACGGGAAGGCCTGGAAGTAGATGGAGGATGCGCTGATGTTCTTCTTGGGGGTGTAAGCG 1868 Query 127448 -CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||| || ||||| || ||||||| || | ||| |||||||| | || ||||| Sbjct 1869 CCGTGGGTGAGGTGACCGCCGTCGGAGAGCTTGAGGCCCATGATGCGCTCGAACGGTTGG 1928 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | |||||||||||||| | ||||| | |||||| || ||| || Sbjct 1929 AGGAAGGCGGTGAAGACGGCAAAGTTGGCAGTGGAGCCTGCGTACGGCTGCACATTGACG 1988 Query 127567 CCCCA----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||||| || || || | ||||| || |||| |||||||| | || | Sbjct 1989 CCCCAGATCTTAGG----GTCGAGGTTGAATGCCTTGAGGGCGCGCTGCTGGGTGAGGAT 2044 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 |||| ||||| |||||| || || ||||| || ||||| |||||| || Sbjct 2045 CTCGAGCTTGTCGATGTGCTCGTTTCCGCCGTAGTAGCGTGCGCCGGGGAGACCCTCGGA 2104 Query 127683 GTACTTGTTGATGAG 127697 |||||||||| |||| Sbjct 2105 GTACTTGTTGGTGAG 2119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025982021360