Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1890 93.3 4e-14 seq3431 86.0 6e-12 >seq1890 Length=49107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||||||| | ||| || |||||||| | ||| || ||| | || || || |||| Sbjct 46284 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGG--AGAGCGTGCGACCGTCCT 46227 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| ||||||| | | ||| || || |||||||| || || ||||| | Sbjct 46226 CAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCT 46167 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || | |||||| | ||| ||||| | | ||||| || | || ||||| | Sbjct 46166 GGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCT 46107 Query 94977 TTCCAGTAAGAGTTTTCAC 94995 | ||||||||||| || || Sbjct 46106 TGCCAGTAAGAGTCTTAAC 46088 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | || || |||||||| | ||| || || | ||| | Sbjct 41587 CGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCG 41646 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| || | || || || || ||||| || || ||| Sbjct 41647 TCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 41706 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||| |||||| | ||| ||||| | || || || | |||||| Sbjct 41707 TCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGATG 41766 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||||||||| Sbjct 41767 GTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 41801 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||||||| | || || ||||| || | ||| || ||| | || || || |||| Sbjct 41821 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGG--AGAGCGTGCGACCGTCCT 41878 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| |||||| | ||||| | | ||| || || || ||||| || || ||||| | Sbjct 41879 CAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCT 41938 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || |||| |||||| | | | ||||| | ||||| || | |||||||| | Sbjct 41939 GGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCT 41998 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || ||||||||||| Sbjct 41999 TGCCGGTCAGCGTCTTGACGAAGATCTGCAT 42029 >seq3431 Length=10244 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 ||||| || | ||| || ||||||| || || | ||||| |||||||||||| ||| Sbjct 1132 TCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCG--TCCTCGAGCTGTTTTCCGGCAA 1189 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 |||| | | ||||| || || || || || || ||||| | || || | ||||||| Sbjct 1190 AGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGTCTTGACGT 1249 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | ||| ||||| | | || || || | ||||| || || || || || || || | Sbjct 1250 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGA 1309 Query 94995 CAAAGATCTGCAT 95007 | ||||||||||| Sbjct 1310 CGAAGATCTGCAT 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448271105346960