Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2057 114 1e-20 >seq2057 Length=22280 Score = 114 bits (126), Expect = 1e-20 Identities = 537/843 (64%), Gaps = 31/843 (4%) Strand=Plus/Plus Query 119667 AAAAAATTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCAGTG 119726 ||||| |||||||| || | ||||| ||||| | ||| || ||||| ||||||| | Sbjct 16153 AAAAAGTTAGTCTTTCCTTGCAGAGAGATGTTCTCCATGAAGTCGAAGGGATTTGTCGCA 16212 Query 119727 TTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGATGTAT 119786 ||| | ||||| |||| ||| | ||| || |||||| || || ||||||||||||||| Sbjct 16213 TTGTAGTGCTTCTCGTTGCCGAGGGCGACCAGCAGTCGGTCGGCGACAAACTCGATGTAT 16272 Query 119787 TCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAAAGAAA 119846 | || ||| | | |||||||| | || | || | |||| || | |||| Sbjct 16273 TGGCTCATCAGACGGGCGTTCATGCCGATCAATGAACATGGCAGCGCATCAGTGAGGAAA 16332 Query 119847 TCCTTTTCAATGTCGACCGCTTCTACAAACATACTCAACACCTTGGTCTTGGAGAGCTTG 119906 | | || ||| ||| ||||| ||| || | ||| || | || | | | | Sbjct 16333 GCTTGCTCGATGGTGACAGCTTCGCCAATGATGCGCAAGAC---GACCTCAGGGTGTGGG 16389 Query 119907 TTCTTTTCGGGAATATATTTATTGTAGTATAGACAAGCAAAGTCGGTGTGTAGTCCTTCG 119966 ||| | | || | | || || ||| || |||||||||||||| || || ||| Sbjct 16390 CGCTTCTTGAGA------TGACTGAAGAGTAGGCACGCAAAGTCGGTGTGCAGACCCTCG 16443 Query 119967 TCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCCGGGTA-GAGCTCCTTTTTTCGAGTC 120025 |||| | ||||| |||||| | | || | |||||| | ||| || ||| Sbjct 16444 TCTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAG-ACCGCGCTTC----- 16497 Query 120026 TTTGATATAGTAGATTGCAGCAAAACTACCAGaaaaaaaGACGCCTTCGACGATAGCAAA 120085 |||| || |||| | ||||| ||||| || |||| ||| || ||| || || Sbjct 16498 -TTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATGCCCTCCACGGCGGCGAA 16556 Query 120086 AGCGACCATGCGTTCGGCGAATGTGGCAGATT-GATTT--TCGATCCATTTTTGAGCCCA 120142 |||| || || || || || || |||| | | | | |||||| ||||| Sbjct 16557 GGCGATCAATCGCTCAGCAAA---GGTCGATTCGGTGTCGTTGATCCACCGCATGGCCCA 16613 Query 120143 AGCCGCCTTCTGCTTGACACTATCTATATGCTCGATCGCATTCAAAATCCTGTCGCATTC 120202 | ||||| |||||||| | || ||| || |||| || | |||| || Sbjct 16614 CTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCAAAGAGGTACTCGCGTTG 16673 Query 120203 TTGGGGATCTTTAATGTAT---TCGACGACAAGAATGTTATACATTTCCGTGTGAACACA 120259 || || || ||||||| |||| || ||| | || | |||| ||||| Sbjct 16674 CTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAG---TATGTCTCCGAGTGAATGTT 16730 Query 120260 CTCAATGAATGTCTGTTGCGCATAGAAAAAACTAGCTTCCAATTCGGGCACGGCGGATTG 120319 ||| || | |||| | ||||| | | ||| || | | |||| | || Sbjct 16731 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCTTGCACCTCCGAACT 16790 Query 120320 CATGTGCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAAC 120379 | |||||| || ||| ||| || || |||| | || ||||| || ||||| || Sbjct 16791 AAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCGAAGAAGGCGAGGAC 16850 Query 120380 GTGCTTAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTT 120439 ||| | | ||| || || || ||||||| || |||| ||| |||| | |||||| Sbjct 16851 GTGGCTGATAAAGTGACGCTCATTGTCGTTCAACTTGTTGTCCCAGTCGTGCATGTCCTT 16910 Query 120440 GGACATGTCGATCTCTTCGACTTTCCAGTGACAAT-CGACCGCTTTCTTGTACGATTGCC 120498 ||| | ||||||||| || | ||||| || || | | || ||||||||| ||||| Sbjct 16911 GGAAAGGTCGATCTCCTCAGCAGTCCAG-AACGATGCCTCTGCCTTCTTGTACATTTGCC 16969 Query 120499 AGA 120501 ||| Sbjct 16970 AGA 16972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478640943957920