Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1890 105 6e-18 seq1114 91.5 1e-13 >seq1890 Length=49107 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || || || || Sbjct 41801 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 41742 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| ||| ||| ||||| || || ||||| || |||| Sbjct 41741 GACACCATCGA--CAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 41684 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || ||||||||||| || | ||||| | || ||| | || |||| Sbjct 41683 AACAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACA 41624 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| || || || || || || || || Sbjct 41623 ACATCCAAAAGGAGTCGACACTCCACTTGGTCCT 41590 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || || || || Sbjct 46304 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 46363 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 46364 GACACAATCGACAACGTAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAA 46423 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| ||| | || || | ||||| | || ||||| Sbjct 46424 CAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAAC 46483 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || ||||| Sbjct 46484 ATTCAGAAGGAGTCCACACTCCACTTGGTGCT 46515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || |||||| | || || || |||| || |||| || ||||| || ||||| ||||| Sbjct 46088 GTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA- 46146 Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 || || ||| || ||| ||||| || || ||||| || |||||||| || | | Sbjct 46147 -CAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGA 46205 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | ||||||||||| || | || || | |||||| | ||| ||||| || ||||| | Sbjct 46206 TCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGG 46265 Query 25189 AATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || || Sbjct 46266 AGTCCACTCTCCACTTGGTCCT 46287 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || |||||| | ||||| || ||||||| |||| || ||||| || || || ||||| Sbjct 42245 GTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGAC 42186 Query 25071 TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 | ||| || ||| ||||| || || || || || ||||||||||| | || Sbjct 42185 AACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCATC 42126 Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190 || ||||| || || | || |||| ||||| | ||| ||||| || ||||| || Sbjct 42125 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGGAG 42066 Query 25191 TCCACGCTACATTTAGTGCT 25210 || || || || || || || Sbjct 42065 TCGACCCTCCACTTGGTCCT 42046 >seq1114 Length=26360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | ||||| |||| |||||||| || Sbjct 18967 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCC 18908 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || |||||| Sbjct 18907 GACACGATTGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAA 18848 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||| | || || || || ||||| Sbjct 18847 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACAAC 18788 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| || || || Sbjct 18787 ATCCAGAAGGAATCGACCCTGCA 18765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433309061670590