Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1890 113 4e-20 seq1114 111 1e-19 >seq1890 Length=49107 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | || || || || || |||||||| ||| Sbjct 41800 ATACCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCG 41859 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || ||||| || || || ||| |||||||||| ||||||||||| Sbjct 41860 GAGAGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGC 41919 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | |||| |||||| | || ||| Sbjct 41920 GGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCG 41979 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || || |||||||| Sbjct 41980 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 42029 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||| || | |||||| |||||||| || || || Sbjct 41605 GTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCG 41664 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||||||||||| |||||||| || ||||| |||||| || Sbjct 41665 GCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTG 41724 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||||| || || | ||| | || ||||||||||| || Sbjct 41725 ACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 41784 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 41785 TTGACGAAGATCTGCAT 41801 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | || || || |||||||| || || Sbjct 46500 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCT 46441 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| |||||||||||||| |||||||| || ||||| ||||| ||| Sbjct 46440 GCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGTCTTT 46381 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||||| || || | ||| | || ||||||||||| || Sbjct 46380 ACGTTGTCGATTGTGTCCGATGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 46321 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 46320 TTGACGAAGATCTGCAT 46304 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || ||||| |||||||| ||| Sbjct 42028 ATACCACCACGCAGGCGAAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCG 42087 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || || ||| ||||||||||||||||||||||| Sbjct 42088 GAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGA 42147 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||| || | ||| ||| Sbjct 42148 GGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTCG 42207 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || |||||||| ||||| || || Sbjct 42208 ACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAAC 42245 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || ||||| |||||||| ||| Sbjct 46305 ATACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCG 46246 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || ||||| || || || || |||| ||||| |||||||||||| Sbjct 46245 GAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGA 46186 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | |||||| | ||| ||| Sbjct 46185 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCG 46126 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || ||||| || ||||| || || Sbjct 46125 ACCTCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAAC 46088 >seq1114 Length=26360 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 |||||| || || | || || | || | || ||||| || || |||||||| || Sbjct 18740 ACCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 18799 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||||| || || || || || ||||||||||||||||||||||||| Sbjct 18800 CAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGG 18859 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||| || | | |||| ||||||| || || || Sbjct 18860 GATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCAC 18919 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | ||| ||||| || ||||| || ||||| ||||||||| Sbjct 18920 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATG 18968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420116038288632