Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3431 141 2e-28 seq1890 136 9e-27 seq2921 131 4e-25 seq1114 123 6e-23 seq2957 98.7 2e-15 seq2146 89.7 1e-12 >seq3431 Length=10244 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||||| ||||| || || ||||| || |||||| ||||| |||||||| Sbjct 1110 AAGGACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTC 1169 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 || | |||||||| || ||||| || ||||| || ||||| || || || || Sbjct 1170 CTCGAGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTC 1229 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 |||||| || | || ||||| || || | ||| || || || ||||| |||||||| Sbjct 1230 CTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGT 1289 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| || ||||||||||| |||||||| Sbjct 1290 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1322 >seq1890 Length=49107 Score = 136 bits (150), Expect = 9e-27 Identities = 180/246 (73%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 288231 GATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTG 288290 || ||||| ||| || ||||||||||| | || || | || | ||| || || || Sbjct 46544 GAGGATTC-TAC-TGGCCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTG 46487 Query 288291 GATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG 288350 || || ||||| | ||| ||||| ||||| || | ||| || ||||||||||| || || Sbjct 46486 AATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCG 46427 Query 288351 CTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 |||||| || ||| || || || || || ||||| |||| || ||||| || || Sbjct 46426 CTGTTGG---TCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGTCTTTACGTTGTCGAT 46370 Query 288408 AGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 | || ||||| || ||||| ||||| ||||| |||||||| ||||||||||| || Sbjct 46369 TGTGTCCGATGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGAT 46310 Query 288468 CTGCAT 288473 |||||| Sbjct 46309 CTGCAT 46304 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | || | || || || ||||| || ||||||| | Sbjct 41803 CCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 41862 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || ||||| |||||||| ||||| ||||| || Sbjct 41863 AGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGA 41922 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | || || || || Sbjct 41923 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACC 41982 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 41983 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 42029 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||||||||| | || || | || | || || |||||||| || ||||| Sbjct 41572 TGGCCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCC 41631 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || |||||||| | || || || || ||||||| |||||||| || Sbjct 41632 GAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTG---GTCC 41688 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| || | || || || || || | || ||| Sbjct 41689 GGGGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGAT 41748 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 41749 TCAACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 41801 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || ||||| || || || | || ||||| |||||| Sbjct 42067 TCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAG 42126 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| ||||| || || || |||||||| || | || ||||| Sbjct 42127 ATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG 42186 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 42187 TCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAACG 42246 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || |||||||| || ||||||| | Sbjct 46302 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 46243 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || ||||||||||| ||||| || Sbjct 46242 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 46183 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | || || || || Sbjct 46182 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 46123 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| || || ||||| || || |||||||| ||| Sbjct 46122 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAACG 46087 >seq2921 Length=71014 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| || | || || || ||||| || ||||| | Sbjct 18107 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 18166 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || ||| Sbjct 18167 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 18226 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || | || ||||| || || | ||| || || || Sbjct 18227 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 18286 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 18287 TCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 18333 >seq1114 Length=26360 Score = 123 bits (136), Expect = 6e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| || | || ||| || ||||| || ||||| | Sbjct 18741 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 18800 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || || ||||| ||||||||||| ||| Sbjct 18801 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 18860 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | || ||||| || || | ||| || || || Sbjct 18861 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACC 18920 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 ||||| ||||||||||| || || |||||||| || || |||||||| ||||| Sbjct 18921 TCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATGATGTT 18973 >seq2957 Length=17564 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 326123 TTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTT 326181 ||||| ||||| || ||| ||||| | ||| | |||| | ||| |||| || |||| Sbjct 10894 TTGTAAACTTTTGCGTGTTGGAGGCCCAAAATCTCCTTGATGTGCT-TGATCTCGGCGTT 10836 Query 326182 CTTCGTGATGCTTGCCACG---GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGG 326238 |||| ||||| || || || || ||||||||||| | ||||||||||| | || Sbjct 10835 CTTCATGATG---GCGTCGTGTGAAGCTTCGCGGACGTTAAGCAGTTTTCCACGTAAGGG 10779 Query 326239 GAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGC 326298 ||||||||| | | ||||| ||||| ||||| || || ||| ||| || || Sbjct 10778 GAACACTCCCCAGTTGTCGCGTCCGACGACGGAAAGACCACCGACAGCAGATGCTTTGGC 10719 Query 326299 GGAATCCCCCTCCGTCAGAATGAGAGTGCA 326328 || || ||||||||||| || || ||||| Sbjct 10718 TGAGTCTCCCTCCGTCAGGATCAGCGTGCA 10689 >seq2146 Length=21837 Score = 89.7 bits (98), Expect = 1e-12 Identities = 235/354 (66%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 348627 TTCGGAATTCTCTGGTGACCGCACTCATGCCGACGGCCTCCACCGCTCAGATCTGTGGAA 348686 ||||||| || ||| || ||||| |||||||||||||| || ||||||| ||| Sbjct 16896 TTCGGAACTCGCTGTTGCTCGCACCTATGCCGACGGCCTCGACGAGTCAGATC-CTGG-- 16952 Query 348687 GCGTAGAAGCG---TTCGAGCCGATCACCTCTAATTTGTATTCCCGACGTACGTTGGCGG 348743 || | | | | || ||||| ||| || |||| |||| ||| | |||| | Sbjct 16953 GCTTCAACGAGTGCTTTGAGCCTTACACGAGCAACCTGTACACCCGCCGTGTGCTGGCTG 17012 Query 348744 GAGAATTCCCAGTGATCAACTCGTATCTCGTCAGAGAACTCATCGAACGCGGAACATGGA 348803 | || |||| ||| ||||| ||| || || | || ||| |||| | || |||| Sbjct 17013 GCGAGTTCCAAGTCGTCAACCCGTGGCTGCTCCGCGAGCTCGTCGAGCAAGGGCTGTGGA 17072 Query 348804 ACGAACAAATGAAAAATCAAATCATTGCAAATGGTGGCAGCATCCAGAAAGTAATCGGAA 348863 |||| || ||||| || | ||||| || |||| ||| || ||||| || ||| | Sbjct 17073 ACGAGCAGATGAAGAACCGGATCATAGCGCATGGCGGCTCGATTCAGAATGTGCCCGGGA 17132 Query 348864 TTCATCCGAGCG--TGAAGGCCGTGTATAAAACGGCATGGGATCTCTCCATGAAAAGCGT 348921 ||| | || || | ||||| |||| || |||| ||||| |||| ||| | | Sbjct 17133 TTC--CGGACCGGATCAAGGCGCTGTACAAGACGGTCTGGGAGATCTCGCAGAAGGTCAT 17190 Query 348922 GATCGATATGGCGTCGGATCGTGGAGCATTCGTGGACCAGACACAAAGCATGAA 348975 || || ||||| |||| || || || ||| | |||| | ||||| |||| Sbjct 17191 CATTGACATGGCCGCGGACCGGGGCGCTTTCATCTGCCAGTCCCAAAGTCTGAA 17244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179600200041308