Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1890 107 2e-18 seq1114 105 7e-18 seq2921 96.9 3e-15 >seq1890 Length=49107 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | || |||||| |||| ||||| |||||||| Sbjct 46500 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCT 46441 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||| ||||| || ||||| || || || ||||| || || |||| Sbjct 46440 GCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGTCTTT 46381 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||| || | || || || | || | |||||||||||||| || Sbjct 46380 ACGTTGTCGATTGTGTCCGATGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 46321 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 46320 TTGACGAAGATCTGCAT 46304 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||| || | || | ||||| || || || |||||||| || | Sbjct 41802 ACCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 41861 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| ||||||||||| ||||| | ||||| || || ||||| || || Sbjct 41862 GAGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGG 41921 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || ||| ||| ||| || | || || | || || Sbjct 41922 AATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGAC 41981 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 41982 CTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 42029 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || | | || || |||||||||||||||||||| Sbjct 41605 GTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCG 41664 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||| ||||| || ||||| || || || || || || ||| ||| Sbjct 41665 GCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTG 41724 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || | || | |||||||||||||| || Sbjct 41725 ACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 41784 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 41785 TTGACGAAGATCTGCAT 41801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | || | ||||| || ||||| |||||||| || | Sbjct 42030 ACCACCACGCAGGCGAAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 42089 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || ||||||||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 42090 AAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGG 42149 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | ||||| || || || Sbjct 42150 GATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTCGAC 42209 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || | |||||||||||| | ||| || ||| Sbjct 42210 CTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAACG 42246 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | || ||||| |||| ||||||||||||||| Sbjct 46272 GTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCG 46213 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || || ||||| |||||||| || || || || || || || ||| Sbjct 46212 GCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 46153 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || || || || || | || | ||||||||| || | ||| Sbjct 46152 ACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTAAGAGTC 46093 Query 64427 TTTACG 64432 || ||| Sbjct 46092 TTAACG 46087 >seq1114 Length=26360 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | || || || || | |||||||| || || |||||||| || | Sbjct 18740 ACCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 18799 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| ||||||||||||||| | ||||| ||||| ||||| ||||| Sbjct 18800 CAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGG 18859 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | || || | ||||| Sbjct 18860 GATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCAC 18919 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | ||| || || || || ||||| Sbjct 18920 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCAT 18967 >seq2921 Length=71014 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| || || | ||||| || || || |||||||| || | Sbjct 18106 ACCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 18165 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || |||||||||||||| | ||||| ||||||||||| || || Sbjct 18166 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 18225 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || || | || || | ||||| Sbjct 18226 GATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCAC 18285 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || |||||||| ||||| Sbjct 18286 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 18333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499622403421840