Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2057 132 5e-26 seq1890 122 8e-23 seq3431 111 1e-19 seq2921 96.9 3e-15 seq1114 91.5 1e-13 >seq2057 Length=22280 Score = 132 bits (146), Expect = 5e-26 Identities = 330/494 (67%), Gaps = 43/494 (9%) Strand=Plus/Minus Query 47084 AAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACG--TC-ACTCTGGCCGAACG 47140 ||||||||||||||||||| || || ||||| | || || || | || || || Sbjct 16623 AAAGGCCGAGTGGGCCATGCGGTGGATC---AACGACACCGAATCGACCTTTGCTGAGCG 16567 Query 47141 TTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATT 47200 |||||||| |||||| ||| |||||| |||||||||| || |||||| | || || Sbjct 16566 ATTGATCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTT 16507 Query 47201 TTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAG 47260 | | || | || | ||||||||||||||||| ||||||||| ||| | Sbjct 16506 CTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCG 16447 Query 47261 AGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAA 47320 |||||| || ||||||||| ||||||| || || || || |||| ||| || Sbjct 16446 AGACGAGGGTCTGCACACCGACTTTGCGTGCCT--------ACTCTTCAGTC-ATCTCAA 16396 Query 47321 GTTGGACGTGCCCAC----------CGTC-AGCGACATGTTTGCCGAAGCCGTCGCCATT 47369 || | |||||| |||| ||| ||| ||| |||||| ||| |||| Sbjct 16395 ----GAAGCGCCCACACCCTGAGGTCGTCTTGCG-CATCATTGGCGAAGCTGTCACCATC 16341 Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429 ||| | || || | || || ||||| || || | || |||||||| || Sbjct 16340 GAGCAAGCTTTCCTCACTGATGCGCTGCCATGTTCATTGATCGGCATGAACGCCCGTCTG 16281 Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCTA-AAGTAT 47483 ||||| | |||||||| |||||||||||||| ||||| || || || | || | Sbjct 16280 ATGAGCCAATACATCGAGTTTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAG 16221 Query 47484 CCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGC 47543 | | | | | | ||| ||||| ||||| || ||| | ||||| || || | || Sbjct 16220 CACTACA-ATGCGACA-----AATCCCTTCGACTTCATGGAGAACATCTCTCTGCAAGGA 16167 Query 47544 AAGACCAACttttt 47557 ||||| |||||||| Sbjct 16166 AAGACTAACTTTTT 16153 >seq1890 Length=49107 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 41803 CCACCGCGCAGGCGAAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 41862 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| ||||| ||| |||| | || || || || || || Sbjct 41863 AGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGA 41922 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | || | |||||| | | |||||| Sbjct 41923 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACC 41982 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 41983 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 42029 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | || ||||| ||||| || ||||| || Sbjct 41575 CCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAA 41634 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || || ||||||| ||||| || || || || Sbjct 41635 AGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGA 41694 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | || || Sbjct 41695 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACC 41754 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 41755 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 41801 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 42031 CCACCACGCAGGCGAAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAA 42090 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||| | ||||| || || ||||| Sbjct 42091 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGG 42150 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| |||| ||| || | |||||| Sbjct 42151 ATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TCGATGGTATCTGAGGACTCGAC 42209 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || |||||||| ||||| || || Sbjct 42210 CTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAAC 42245 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 46302 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 46243 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || || |||||| || || || || ||||| Sbjct 46242 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 46183 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | |||||| Sbjct 46182 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 46123 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || ||||| || ||||| || || Sbjct 46122 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAAC 46088 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || ||||| || ||||| ||||| || Sbjct 46530 CCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 46471 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| |||| | ||||| || || || || Sbjct 46470 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGA 46411 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| ||| ||| | ||||| ||| ||||||| || || Sbjct 46410 ATGCCCTCCTTGTCTTGGATCTTCGTCTTTACGTTGT-CGATTGTGTCCGATGATTCAAC 46352 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||||||||| || || || || |||||||| Sbjct 46351 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 46304 >seq3431 Length=10244 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || ||| || || || ||||||||||| || | Sbjct 1131 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCGAGCTGTTTTCCGGCAAA 1190 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| || || || || |||||||||||| ||| || ||||| ||| Sbjct 1191 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 1250 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||| | ||| || |||| ||| | ||| |||||||| || || || | Sbjct 1251 G-TCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGA 1309 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 1310 CGAAGATCTGCAT 1322 >seq2921 Length=71014 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| || || || ||||| || Sbjct 18104 GCACCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 18163 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| || || ||||| || || ||| |||| | |||||||| || || Sbjct 18164 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 18223 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || |||||||||||| ||| || ||||| |||| |||| ||||| | | ||| Sbjct 18224 GGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGAAGACTC 18282 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | ||| || || || || || || || |||||||||||| Sbjct 18283 CACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 18334 >seq1114 Length=26360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | |||| || | || | || || || || || || ||||| || Sbjct 18738 GCACCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCC 18797 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||| || || || ||||| || || || |||| | ||||| || || ||| Sbjct 18798 GACAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGA 18857 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || |||||||||||||| ||| || ||||| |||| || | ||||| | ||| Sbjct 18858 GGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG-TCAATCGTGTCGGATGACTC 18916 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | ||| ||||| || ||||| || ||||| ||||||||| Sbjct 18917 CACCTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATG 18968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479485676640