Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1890 96.9 3e-15 seq2146 86.0 6e-12 >seq1890 Length=49107 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||| || || | || || | || Sbjct 41827 TGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGC 41886 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | ||||| ||||||||||||||||| || || || || || ||| Sbjct 41887 TTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTT 41946 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| ||||||||||| ||||| || | || |||||||| Sbjct 41947 GTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 42006 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 42007 AGCGTCTTGACGAAGATCTGCAT 42029 >seq2146 Length=21837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 214/317 (68%), Gaps = 10/317 (3%) Strand=Plus/Plus Query 124004 CGAAACAATTTATTACGGCGCTTTGGAGGCGAGC-TGCGAACTTGCGAAAATTCACGGCG 124062 ||| || || || ||| |||| | ||| ||| | ||||| ||||| || | ||| Sbjct 16714 CGAGACCATCTACCACGCCGCTCTTGAG-CGATCGTGCGAGCTTGCCAAGGAGCTCGGGA 16772 Query 124063 CGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGA 124122 | ||||| | |||| |||| ||||||| ||| || | ||||||||||||||| Sbjct 16773 CCTACGAGACATACGAGGGCTGCCCGGCCAGCAAGGGCGAGCTCCAGTACGACATGTGGG 16832 Query 124123 ATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA-CGCAT-ATCGAC--G 124178 | ||| || | | | ||||||||| || | | | ||| |||| || | | | Sbjct 16833 GCGTTACCCCCAGCGGTCTTTGGGACTGG-GC---TGAGATCAAGCGCAACATTGCCTCG 16888 Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 |||||| | || |||||||||||| | || ||||||||||| | || ||| || Sbjct 16889 CACGGTCTTCGGAACTCGCTGTTGCTCGCACCTATGCCGACGGCCTCGACGAGTCAGATC 16948 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTA 124298 | || |||||| | ||| ||||| | ||| | ||| ||||| || || ||| | Sbjct 16949 CTGGGCTTCAACGAGTGCTTTGAGCCTTACACGAGCAACCTGTACACCCGCCGTGTGCTG 17008 Query 124299 GCCGGCGATTTTCAAGT 124315 || ||||| || ||||| Sbjct 17009 GCTGGCGAGTTCCAAGT 17025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451982938956560