Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1890 150 2e-31 seq2921 138 1e-27 seq3431 127 2e-24 seq1114 127 2e-24 >seq1890 Length=49107 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || | ||| |||||||||||| |||||||| || ||||| || | Sbjct 41586 ACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCC 41645 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||||||||| || ||||||||||| ||||| | || | || |||||| Sbjct 41646 GTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTT 41705 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||||| | | | ||||| ||||| || || | ||||| Sbjct 41706 GTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGAT 41765 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||||||| || || ||||| ||||| Sbjct 41766 GGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 41801 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || |||||||| |||||||| Sbjct 41838 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 41897 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | ||| | || |||||||||| |||||| |||||| | Sbjct 41898 GATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATT 41957 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | |||||||| ||||| |||||||| || || Sbjct 41958 GTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGAC 42017 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 42018 GAAGATCTGCAT 42029 Score = 113 bits (124), Expect = 5e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| |||| || |||||||||||||| || Sbjct 46267 CTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAA 46208 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || || ||||| | || | || |||||||||| |||||| |||||| | Sbjct 46207 GATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 46148 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || ||||| ||||| || || || ||||| Sbjct 46147 GTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAAC 46088 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || ||||| | || || |||||||| |||||||| Sbjct 42066 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 42125 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | | |||||||||| |||||| |||||| ||| Sbjct 42126 GATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 42184 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || || || || || | |||||||| ||||| || || || |||| Sbjct 42185 TGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAA 42244 Query 46581 C 46581 | Sbjct 42245 C 42245 >seq2921 Length=71014 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 18142 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 18201 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| |||||| ||| Sbjct 18202 GATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 18260 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 18261 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 18320 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 18321 CGAAAATCTGCAT 18333 >seq3431 Length=10244 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||||| ||||| ||||||||| || || || |||| ||| Sbjct 1114 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1173 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || ||||| || || | ||||||||||| | || | | |||||||||| | Sbjct 1174 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1233 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | |||||| || ||||| || | ||||| || || Sbjct 1234 ATCTTGGTCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1292 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || || || || || ||||| ||||| ||| Sbjct 1293 GCCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1326 >seq1114 Length=26360 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || || |||| ||||||||||||||||| || Sbjct 18777 TCCTTCTGGATGTTGTAGTCCGACAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAG 18836 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || ||||||||| |||||| |||||| ||| Sbjct 18837 ATGAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTT 18895 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||| || ||||| || | ||||| || ||||| || || || || || Sbjct 18896 GTCAATCGTGTCGGATGACTCCACCTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCAC 18955 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 18956 AAAGATCTGCAT 18967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565213063188720