Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2146 109 2e-18 seq3254 107 6e-18 seq3192 87.8 5e-12 >seq2146 Length=21837 Score = 109 bits (120), Expect = 2e-18 Identities = 342/522 (66%), Gaps = 7/522 (1%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||||||| |||| ||||| ||| |||||||| ||||||||||||| | ||||||| Sbjct 16412 CGCTGTACTCTATGATCTCCGTGCAAAGGTTAGAGTTCTTGATGGTGCCGAGGTTCTTCT 16353 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || || | ||| ||| |||||||| || ||| | ||| | || |||||| ||| Sbjct 16352 GGTTCGACTTGCGGTTGGCAGCGTCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCCGTCT 16293 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT-AATTTGCTTGTTGTATCTGCCT 155804 | || ||||||| |||||| | | || || | ||| | | | || Sbjct 16292 GGGCCTCCAGAACGGCGTACCAGAGCTTCTGAGCCTTGACCGTGCGGCGAGCA-CGACCC 16234 Query 155805 TCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCA 155864 || ||| || ||| || || | | | |||||||| || || || || Sbjct 16233 TCGCGCTCGTACTTCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCG 16174 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAA 155923 ||||||| | ||||||| | ||||||| | | | | | | | || |||| ||| || Sbjct 16173 GGGCACTCAGCGGGGCACATGAGCGACC-ACTCTCCGTTCTGTTCGACTCGCTTCATGAA 16115 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | || ||||| || ||||| || || | || |||||| | |||||| Sbjct 16114 CAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCGTG 16055 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 ||||||| || || | ||| || | || | || ||||| | || || || Sbjct 16054 GTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATGGC 15995 Query 156044 AAAA-CTACCATT--CCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| | || | | | ||||||||||| || || || ||||| || || |||||||| Sbjct 15994 AAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAGAC 15935 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 | ||||| |||| ||| || ||||| ||| |||||||| Sbjct 15934 TCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCC 15893 >seq3254 Length=65442 Score = 107 bits (118), Expect = 6e-18 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 |||||| | | ||| ||||| | | ||| |||||| ||||| | | ||| |||| Sbjct 49156 ACCACAGATGTCACAAACATGAAGCCGGTACGCATCACTAGCGTCGAACATCCGCTCCTT 49215 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 |||| || | ||||| || |||||||||||||||||||| || || || ||||| Sbjct 49216 CAAGAAGGAAGCTATGCCGTGCGAGATCATACAATCACGCTCCATCTCTCCAAACCGAAG 49275 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT 251591 |||||| || ||| || |||||| | |||||||| || | | | || || || | Sbjct 49276 ACCACCGTCACGACTCCGGCCCTCGACCGGCTGACGCGTCAAAATCTGCA-CGGGCCCAC 49334 Query 251592 GGAGCGGCTA-TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGAC 251650 | | || | || ||| || | ||||| ||||| |||||||||||| | | |||| Sbjct 49335 GCGCCCGCGAGTGGATCTTGTCGTCGACCATGTGCTTCAGACGCTGGTAGTACGTCGGAC 49394 Query 251651 CGATGAAG 251658 ||| |||| Sbjct 49395 CGAGGAAG 49402 >seq3192 Length=13222 Score = 87.8 bits (96), Expect = 5e-12 Identities = 209/305 (69%), Gaps = 22/305 (7%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 |||||| || || ||||| || || || || || || || ||||| || ||||| || Sbjct 1421 CTTGATCAAGCGGCGCTGGATGTAGCCCGTCTCAGCCGTCTTGACAGCCGTGTCAATCAG 1362 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATA 302700 ||| | ||||| |||| || |||||||| | || | || ||| || || | | Sbjct 1361 ACCTTCCCGACCGGCCATGGCGTGGAAGAAGAATTCCTGCGCGGTC--AGACCGCGCAGG 1304 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGC--GAATCGTCGAACTTGGTAAAGTGTG 302758 | ||| |||| || || ||||| ||||| ||| |||| |||||| ||||| | Sbjct 1303 TACGAGTTCTCCACAAAGCCACGGCTTTCGGGACTGAA--GTCGTCCTTGGTGAAGTGCG 1246 Query 302759 GCAGGGTCCTGTTCTCATAGCCGTATGGG-ATACGCTTTCCATCAACGTTCTGCTGTCC- 302816 ||||||| | || || | || | ||| | ||||| || || || |||||||||| Sbjct 1245 GCAGGGTGCGGTA-TCGGAACCCAAAGGGCACGCGCTTCCCCTCGACAATCTGCTGTCCG 1187 Query 302817 ---CAGGCACGAAATCATCTGCGAAATATTTA--AATCACTGCCCTTGGAGCCAGCATTT 302871 ||||| ||| |||||| ||||| || | || || |||||||||||||| | Sbjct 1186 ACACAGGC-CGA---CATCTGGGAAATGTTGATGAAGGAC--CCCTTGGAGCCAGCGATG 1133 Query 302872 ACCAT 302876 ||||| Sbjct 1132 ACCAT 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471749976420482