Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2057 230 3e-54 seq2146 178 2e-38 seq2959 118 2e-20 seq569 105 1e-16 seq3192 102 1e-15 >seq2057 Length=22280 Score = 230 bits (254), Expect = 3e-54 Identities = 384/542 (71%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| || |||||| |||||| Sbjct 16974 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACC 16916 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| | ||| |||| | ||||| || || |||| Sbjct 16915 TTTCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCA 16856 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || ||| || || || || || ||||||||| | || Sbjct 16855 GCCACGTCCTCGCCTTCTT-CGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAG 16797 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || |||| ||||| ||| ||||||| || | || ||||| ||||||||| Sbjct 16796 CGGTTTAGTTCGGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 16737 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || || ||||| || || |||||||| ||| | ||||| Sbjct 16736 ATGGAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCC- 16678 Query 1456072 GTCGAGAAGG--ACCACCTCTTTCGCGCCATCGACACGGTGCC-GTCGGTGAGGAAAAAG 1456128 || || | | |||||||| ||||| || || | || |||| | | | ||||| Sbjct 16677 -TCAGCAACGCGAGTACCTCTTTGATGCCATGGAGACCATCCCTGTCG-TCAAGCAAAAG 16620 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 ||||| ||||| ||| |||||||||| | | | ||||| |||||| ||||| | Sbjct 16619 GCCGAGTGGGCCATGCGGTGGATCAACGAC-ACCGAATCGAC-CTTTGCTGAGCGATTGA 16562 Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 ||| ||| ||||| || ||||||||||| ||||| || || | ||||||| |||| Sbjct 16561 TCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGC 16502 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 ||||||||||||| ||||||||||| | || || |||||| | ||||| || ||| Sbjct 16501 TCAAGAAGCGCGGTCTCATGCCCGG-CCTCACGTTCTCCAACGAGCTCATCAGCCGAGAC 16443 Query 1456308 GA 1456309 || Sbjct 16442 GA 16441 Score = 93.3 bits (102), Expect = 6e-13 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| | ||| || ||| |||||| ||| || ||| || ||||||| | Sbjct 16364 ATCATTGGCGAAGCTGTCACCATCGAGCAAGCTTTCCTCACTGATGCGCTGCCATGTTCA 16305 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||||||||||||| | || ||| |||| ||||| || ||| ||||||||||| | Sbjct 16304 TTGATCGGCATGAACGCC-CGTCTGATGAGCCAATACATCGAGTTT-GTCGCCGACCGAC 16247 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | |||||||||||| || | || || ||| | ||| Sbjct 16246 TGCTGGTCGCCCTCGGCAAC-GAGAAGCACTACAATGCGACAAATCCCTTCGACTTCATG 16188 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTT 1456737 ||| ||||| || | || ||||| |||||||| Sbjct 16187 GAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 16153 >seq2146 Length=21837 Score = 178 bits (196), Expect = 2e-38 Identities = 275/393 (70%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| |||| |||| || ||||||||||||| |||||| | ||| | | ||| | Sbjct 15590 GTCGCCGAGAGGCCGCAACATATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGG-- 15647 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909 || | ||| | || || ||| ||| ||| | ||||||| || ||| Sbjct 15648 -ACATTGACCAGGC-------CA-----TCGACACTTACAACCTCATGTCGGAGAAGTAC 15694 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 |||||| || ||||||| ||||| |||||||| || || ||| |||| || || Sbjct 15695 TTCACCCACGCCTCGCCCACCCTCTTCAATGCCGGAACACCCAACCCCCAGATGTCATCC 15754 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| | ||||||| || || ||||| |||||||| ||||| |||||| Sbjct 15755 TGCTTCCTGGTCACGATGAAGGATGACTCCATCGATGGCATCTACGACACCCTCAAGACT 15814 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 ||||| | ||| |||| ||||||| |||||||| | | ||| | || | | Sbjct 15815 TGCGCCATGATCAGCAAGACGGCCGGTGGCATCGGGCTCAACATTCACTGCATCCGAGGC 15874 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 | ||| | ||| | || || ||||||||| ||||||||| |||| ||||||||||| Sbjct 15875 ACCGGCTCTTACATTGCTGGAACCAACGGCGTCTCCAACGGCATTGTTCCCATGCTTCGA 15934 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || ||| |||| || ||||||||||||||| Sbjct 15935 GTCTTCAACAACACCGCTCGCTACGTCGACCAG 15967 >seq2959 Length=17512 Score = 118 bits (130), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || |||||||||||||||||| || | | ||| || |||||| || Sbjct 12145 ATCTACCGTGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCAAACAAGGCC 12198 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | ||||| |||||| | ||||| |||| ||||||| | |||||||| Sbjct 12199 ATGGCCATCCTCAACTCCTTTGTCCAGGACATCTTCGAGCGCATCGCCTCCGAGGCCTCC 12258 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || ||||||| || ||| | ||||||||||| || ||||| Sbjct 12259 AAGCTTGCATCCTACAACAAGAAGTCGACCATCTCTGCCCGCGAGATCCAAACGGCCGTC 12318 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| | | ||| ||||| ||| ||||||| ||||||| || |||| Sbjct 12319 CGGCTGATCCTCCCCGGTGAACTTTCCAAGCACGCCATCTCCGAAGGTACCA 12370 >seq569 Length=29348 Score = 105 bits (116), Expect = 1e-16 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 332966 TCCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGG 333025 ||||||||| ||||| ||||| ||||| | | || | || |||||| ||||||||| Sbjct 7507 TCCATGGTCCGTCGGAGCGCCTGCTGGGCTCCTGAGGTCATGCTGTCGGCTTCGTCGAGG 7448 Query 333026 ATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATG 333085 ||||||| |||||| || ||| |||| || || |||| ||| | ||||| Sbjct 7447 ATGATGAGCTTGTGCCGGCCGGGCGGTAGGGTGACTGTTTTTTGGGCAAAGCTCTTGATC 7388 Query 333086 ATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGC 333141 | || || |||||||| | || |||||||| |||||||| || ||||| ||||| Sbjct 7387 TTATTCCGGACGACGTCGATTCCTCGCTCGTCGGACGCGTTCAGCTCGAGGACGGC 7332 >seq3192 Length=13222 Score = 102 bits (112), Expect = 1e-15 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1816048 GCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCC 1816107 |||||| |||| || | ||||||| ||||| | | | ||| ||||| |||| | Sbjct 1508 GCCGTCCTCGCCGTACGAGAACTGGATAATGTGGTTCATCGAGTTACGCACCGTGCCGTC 1449 Query 1816108 GCGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC- 1816166 | || | || ||| | || |||||| | ||||||||||||||||| |||| Sbjct 1448 GTAGCAGACCATCACATCCTCGAGCGCCTTGATCAAGCGGCGCTGGATGTAGCC-CGTCT 1390 Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 | || |||||||| |||||||| | ||| || || || ||| | || ||| || || | Sbjct 1389 CAGCCGTCTTGACAGCCGTGTCAATCAGACCTTCCCGACCGGCCATGGCGTGGAAGAAGA 1330 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 || ||| | | || |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 1329 ATTCCTGCGCGGTCAGACCGCGCAGGTACGAGTTCTCCACAAAGCCACGGCTTTCGGG 1272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177465323708932