Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1114 125 7e-24 seq1890 122 9e-23 seq2921 118 1e-21 seq3431 105 7e-18 seq2146 98.7 1e-15 >seq1114 Length=26360 Score = 125 bits (138), Expect = 7e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| |||||||| || || |||||||| || |||||||||| || || | || | Sbjct 18750 AGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGC-GTTCG 18808 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| |||||||| ||||| ||||| || | |||||| || || || || ||||| || Sbjct 18809 GCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGGATGCCCTC 18868 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 18869 CTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCACCTCGAGGGT 18928 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || || || | ||| || || || || ||||| ||||| Sbjct 18929 GATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATGATGTTT 18974 >seq1890 Length=49107 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| || | ||| || || || |||||||| ||||||||||| | Sbjct 41575 CCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAA 41634 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||| ||||| ||||| ||||| || || || || Sbjct 41635 AGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGA 41694 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| ||| | ||||| || ||||| || Sbjct 41695 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACC 41754 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 41755 TCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 41801 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| ||||| |||||||||||||| Sbjct 46530 CCACCGCGGAGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAG 46471 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || |||||||| || || | ||||| || || || || Sbjct 46470 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGA 46411 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || || || ||| | |||||| || ||||| || Sbjct 46410 ATGCCCTCCTTGTCTTGGATCTTCGTCTTTACGTTGTCGATTGTGTCCGATGATTCAACC 46351 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 46350 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 46304 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| |||||||| |||||||||||| Sbjct 46302 CCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 46243 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| ||||| ||||| |||| ||| || || || || || Sbjct 46242 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGA 46183 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 46182 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACC 46123 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||||||| || || || | ||| |||||| Sbjct 46122 TCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAACG 46087 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | ||| || ||| || ||||| Sbjct 41826 GTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTG 41885 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | ||| || || || ||||| ||||| || || || || || || Sbjct 41886 CTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 41945 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | ||||| ||| | ||||| || || || || ||||| || ||||| || ||||| Sbjct 41946 TGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 42005 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || ||||| Sbjct 42006 CAGCGTCTTGACGAAGATCTGCAT 42029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| |||||||||||| || |||| | || || ||||| Sbjct 42054 GTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGCTG 42113 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | |||||| || || || || || || || || || || || || Sbjct 42114 CTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 42173 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || || || || || || ||||| || ||||| || ||||| Sbjct 42174 GGTCTTGACGTTGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 42233 Query 134690 TAAAGTTTTAACG 134702 | ||| |||||| Sbjct 42234 AAGAGTCTTAACG 42246 >seq2921 Length=71014 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || || || ||||| || ||||||||||| || ||| | Sbjct 18116 AGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 18175 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | ||||||||| || || || || || || Sbjct 18176 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCC 18235 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 18236 TTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTG 18295 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || |||||||| ||||| Sbjct 18296 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 18333 >seq3431 Length=10244 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||| ||||| || ||||||||||||| | || | ||| ||| Sbjct 1114 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1173 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || ||||| || | |||||||| || || || || || || || || || Sbjct 1174 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1233 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || ||||| ||||| || || || || Sbjct 1234 ATCTTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTG 1293 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | || || ||||| || ||||| ||| Sbjct 1294 CCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1326 >seq2146 Length=21837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 277/423 (65%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 8542 TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCC 8601 ||||||||||||||| | ||| | ||| | || || | ||||| |||||||| || Sbjct 16598 TCGAACATGCGCCACCGCCCCATCGGCATCGGAGTCAACGGTCTCGCCGACGCATTCATG 16657 Query 8602 ATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAA 8661 || || || | ||| || || | || || | ||||||||| | || || Sbjct 16658 ATCATGGGCTACGCCTTTGACAGTCCCGAGGCCAAGAAGCTCAACATTCAGATCTTCGAG 16717 Query 8662 ACGGTGTATTACGGCGCATTAGAAGCCAGC-TGTCAACTTGCCCGAGAATTGGGCACGTA 8720 || | || ||| ||| | || || | | || | |||||| || | || || || Sbjct 16718 ACCATCTACCACGCCGCTCTTGA-GCGATCGTGCGAGCTTGCCAAGGAGCTCGGGACCTA 16776 Query 8721 CGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGT 8780 ||| | |||| |||| |||| |||||| || | || |||||||||||| || Sbjct 16777 CGAGACATACGAGGGCTGCCCGGCCAGCAAGGGCGAGCTCCAGTACGACATGTGGGGCGT 16836 Query 8781 CACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTT 8840 || |||| | | | ||| | ||| || | || ||||| ||||| |||| | Sbjct 16837 TACCCCCAGCGGTCTTTGGGACTGGGCTGAGATCAAGCGCAACATTGCCTCGCACGGTCT 16896 Query 8841 GCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAA 8900 || || ||||||||| | || ||||| || ||| |||| ||| || |||| Sbjct 16897 TCGGAACTCGCTGTTGCTCGCACCTATGCCGACGGCCTCGACGAGTCAGATCCTGGGCTT 16956 Query 8901 CAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGA 8960 |||||| | ||||||||| | ||| | |||| ||||| | || ||| |||| ||||| Sbjct 16957 CAACGAGTGCTTTGAGCCTTACACGAGCAACCTGTACACCCGCCGTGTGCTGGCTGGCGA 17016 Query 8961 TTT 8963 || Sbjct 17017 GTT 17019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505375745516720