Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2057 138 2e-27 seq2146 100 4e-16 >seq2057 Length=22280 Score = 138 bits (152), Expect = 2e-27 Identities = 369/561 (66%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || ||| || ||||| || || ||||| |||| || || | ||||| || || || Sbjct 16413 TAGGCACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGT 16472 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| || ||||| ||||| ||||| |||||||| || |||| ||||| || ||||| || Sbjct 16473 GAGGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAA 16532 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT- 39791 ||||||||| || || || || || || | | || ||| | | | | || | | Sbjct 16533 GAAGATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTC 16592 Query 39792 GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 || |||||| | ||||| || || || | ||| || ||| || || || || || Sbjct 16593 GTTGATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGC 16652 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || |||||| || | || | | || || ||||| || || | |||| || Sbjct 16653 ATCAAAGAGGTACTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTA 16712 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 | || || || ||||| || ||| ||||| || ||||| || |||| || || | Sbjct 16713 TGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGC 16772 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 ||| ||||| |||| ||| | || | | || || || || || || || || Sbjct 16773 TGCTTGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGC 16832 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT--- 40086 || || || || | || || | ||||| | |||| | |||| || || Sbjct 16833 TGCGAAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCATTGTCGTTCAACTTGTTGTC 16892 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| | || || || || | || | || ||||| ||||| ||||| |||||||| Sbjct 16893 CCAGTCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGC 16952 Query 40147 CTTTTTGTACATGTTCCATAT 40167 ||| |||||||| | ||| || Sbjct 16953 CTTCTTGTACATTTGCCAGAT 16973 >seq2146 Length=21837 Score = 100 bits (110), Expect = 4e-16 Identities = 385/605 (64%), Gaps = 0/605 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 |||||||| || || | || || | | || || || ||| || ||||| | ||| Sbjct 16206 TCGAATTCCTCACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGAC 16147 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 ||| | | | | | ||||| ||||| || | |||||||||||||| || ||| Sbjct 16146 CACTCTCCGTTCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAG 16087 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 || || | || | | || || || || || || | || ||||| ||||| | Sbjct 16086 AGCTCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAG 16027 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | || || ||||| || || | || || || | | |||||||| || || || ||| Sbjct 16026 ACGTCCGAGTGCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCC 15967 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | ||| | || ||||| || |||||| ||||| |||| ||| || || || Sbjct 15966 TGGTCGACGTAGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAG 15907 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 || || ||||||| ||| ||| || | | || || ||| || || Sbjct 15906 ACGCCGTTGGTTCCAGCAATGTAAGAGCCGGTGCCTCGGATGCAGTGAATGTTGAGCCCG 15847 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || ||| | || ||| | || ||| || | ||||| || || || || Sbjct 15846 ATGCCACCGGCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATGCCATCG 15787 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 ||| ||||| |||| | | || || ||| ||||| || | | ||||| Sbjct 15786 ATGGAGTCATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGGTTGGGTGTTCCG 15727 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||||| || | || || || ||||| ||||| | || || || | || ||||| || Sbjct 15726 GCATTGAAGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGTG 15667 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 || || || || || |||| | ||||| || | ||||| ||||| | |||||| Sbjct 15666 TCGATGGCCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATGT 15607 Query 70117 TGAGG 70121 || || Sbjct 15606 TGCGG 15602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686878009313040