Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1890 111 5e-19 seq2921 100 9e-16 >seq1890 Length=49107 Score = 111 bits (122), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| ||||| || || || || Sbjct 46306 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTC 46247 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || |||||||| |||||||| || || || Sbjct 46246 GGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGG 46187 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 46186 AGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTC 46127 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || |||| ||||| || || || || || || Sbjct 46126 GACCTCGAGGGTAATGGTCTTGCCAGTAAGAGTCTTAAC 46088 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| ||||| || || || || Sbjct 42027 CATACCACCACGCAGGCGAAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTC 42086 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || ||||| || ||||| ||||| || || || || Sbjct 42087 GGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGG 42146 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | ||| || | || Sbjct 42147 AGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTC 42206 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| ||||| || || || || Sbjct 42207 GACCTCGAGGGTGATGGTCTTGCCGGTAAGAGTCTTAAC 42245 >seq2921 Length=71014 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || || Sbjct 18106 ACCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 18165 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| || || || Sbjct 18166 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 18225 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||| || || ||||| || || | || || || || |||| || || | || || Sbjct 18226 GATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCAC 18285 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 18286 CTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 18333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515184780689558