Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2146 269 3e-67 seq2957 89.7 6e-13 >seq2146 Length=21837 Score = 269 bits (298), Expect = 3e-67 Identities = 480/690 (70%), Gaps = 8/690 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||||||| || |||||| |||| ||||| ||||| || || || |||| |||||| Sbjct 15689 AAGTACTTCACCCACGCCTCGCCCACCCTCTTCAATGCCGGAACACCCAACCCCCAGATG 15748 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| |||||||||||||||| ||||| ||||||||||| || ||| Sbjct 15749 TCATCCTGCTTCCTGGTCACGATGAAGGATGACTCCATCGATGGCATCTACGACACCCTC 15808 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGT 53445 ||| || ||| ||| |||| | | ||||| ||||| || || | | | | | Sbjct 15809 AAGACTTGCGCCATGATCAGCAAGACGGCCGGTGGCATCGGGCTCAACATTCACTG-CAT 15867 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 ||| | | |||| | || || || ||||||||| || | || || || || || Sbjct 15868 CCGAGGCACCGGCTCTTACATTGCTGGAACCAACGGCGTCTCCAACGGCATTGTTCCCAT 15927 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| || |||||||||||||| || || |||||| |||||||||| ||||| ||| Sbjct 15928 GCTTCGAGTCTTCAACAACACCGCTCGCTACGTCGACCAGGGTGGCAACAAGCGACCGGG 15987 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | | || ||||||||| | ||||| |||||| | ||| | | ||||| ||||| || | Sbjct 15988 GGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGACGTCTTCGAGTTCCTCGACCTCAG 16047 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684 ||| || || | || ||| | ||| |||||| || || ||| || || ||||||| Sbjct 16048 GAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAGCTCTTCTAC-GCCCTTTGGATTC 16106 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | ||| | |||||| | || || || ||| ||||||| || |||||||| | Sbjct 16107 CCGACTTGTTCATGAAGCGAGTCGAACAGAACGGAGAGTGGTCGCTCATGTGCCCCGCTG 16166 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 |||||||||| || | ||||| |||||||| || | | | || || ||||| Sbjct 16167 AGTGCCCCGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGAAGTACG 16226 Query 53805 CAGTTC-AGGGCCGCTACAAGAAG-AAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCT 53862 || | |||| || | | | | | ||||||||| | || | ||| | || | || Sbjct 16227 -AGCGCGAGGGTCG-TGCTCGCCGCACGGTCAAGGCTCAGAAGCTCTGGTACGCCGTTCT 16284 Query 53863 CAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAA 53922 || |||| |||||| || | || | |||| |||||||| | | |||| || Sbjct 16285 GGAGGCCCAGACGGAGACTGGCAACCCTTTCATGCTTTACAAGGACGCTGCCAACCGCAA 16344 Query 53923 GAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | |||||||||||| ||||| |||||| Sbjct 16345 GTCGAACCAGAAGAACCTCGGCACCATCAA 16374 Score = 140 bits (154), Expect = 4e-28 Identities = 571/878 (65%), Gaps = 44/878 (5%) Strand=Plus/Plus Query 55093 ATTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGT 55152 || |||||| | ||||||||||| || || || || | | ||||| ||| | | Sbjct 16498 ATATGACTTCAAGAAGCTTCACGAGGTCACCAAGGTCGTCTGTGGCAACCTCAACAAGAT 16557 Query 55153 CATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCG 55209 |||||| ||| |||||||| | | || || | ||||| ||| | || ||||| Sbjct 16558 CATCGATGTGAACTACTACCCTGTGCCCGAGGCCAAG---AAGTCGAACATGCGCCACCG 16614 Query 55210 GCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTT 55269 ||||||| |||||| || | || | |||||| |||||||| | || | |||| Sbjct 16615 CCCCATCGGCATCGGAGTCAACGGTCTCGCCGACGCATTCATGATCATGGGCTACGCCTT 16674 Query 55270 CGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTCGCATCTACTTTGCA 55327 ||| | | | | |||| | | || | |||||| || | ||||||| || Sbjct 16675 TGACA-GTCCCGAGGCCAAGAAGCTCAACATTCAGATCTTCGAGAC-CATCTACCACGCC 16732 Query 55328 GCGCTCGAGGAGTCGTGTCATCTGGCTATG-AGCGAGGGGACCTACGAGACGTTCCGTGA 55386 || || ||| ||||| | || || | | ||| ||| ||||||||||| | | | Sbjct 16733 GCTCTTGAGCGATCGTGCGAGCTTGCCAAGGAGCTCGGG-ACCTACGAGACATACGAGGG 16791 Query 55387 TTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCA---- 55442 | || || |||||| ||||||| ||| | |||||| || | ||||| Sbjct 16792 CTGCCCGGCCAGCAAGGGCGAGCTCCAGTACGACATGTGGGGC--GT-TACCCCCAGCGG 16848 Query 55443 TGTTTGACA--------AGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCT 55494 | |||| | || | |||| ||||| || | || || || ||||| || Sbjct 16849 TCTTTGGGACTGGGCTGAGATCAAGCGCAACATTGCCTCGCACGGTCTTCGGAACTCGCT 16908 Query 55495 GCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTT 55554 | | | || || ||||| || || |||||| ||||||| ||||| ||||||| || Sbjct 16909 GTTGCTCGCACCTATGCCGACGGCCTCGACGAGTCAGATCCTGGGCTTCAACGAGTGCTT 16968 Query 55555 CGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGAT 55614 ||||| ||||||| |||| | ||| ||||| || || || ||||| | | Sbjct 16969 TGAGCCTTACACGAGCAACCTGTACACCCGCCGTGTGCTGGCTGGCGAGTTCCAAGTCGT 17028 Query 55615 CAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAA--GTGGAACCCGCAGATCAAG 55672 |||| | || || || || | || ||| ||||||| |||||| ||| Sbjct 17029 CAACCCGTGGCTGCTCCGCGAGCTC--GTCGAGCAAGGGCTGTGGAACGAGCAGATGAAG 17086 Query 55673 A--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATTCCTCTGCGT 55726 | ||||| || | || | || || || | |||||| || | |||||| || Sbjct 17087 AACCGGATCATAGCGC---ATGGCGGCTCGATTCAGAATGTGCCCGGGATTCCGGACCGG 17143 Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAG 55785 |||||| | | ||| |||||| |||||||| | |||||| ||| | ||||||||| Sbjct 17144 ATCAAGGCGCTGTACAAGACGGTCTGGGAGATCTCGCAGAAG-GTCATCATTGACATGGC 17202 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || || || | |||| ||||||||| |||||||||| || | || Sbjct 17203 CGCGGACCGGGGCGCTTTCATCTGCCAGTCCCAAAGTCTGAACATCCATCTGCAAGCGCC 17262 Query 55846 TT-CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | ||||||| || | | |||||||| || || ||||||||||| | ||||||| Sbjct 17263 GAGCTTTGGCCAACTT-ACCAGCATGCACTTCTATGGCTGGAAGAAGGGGTTGAAGACGG 17321 Query 55905 GTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 | | |||||| || |||||||| | |||||| ||| Sbjct 17322 GGACGTACTACCTCCGGACCCGGCCTGCGGCCAATGCG 17359 >seq2957 Length=17564 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||| ||||| || || | ||| || |||||||| Sbjct 12027 GTGAAAATGTAACGAGCCGAGGCAGCGTCCTTTCCTCCCATAGCACGAGTGCCGAATTGG 11968 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| | | || ||| ||||| ||||| |||| ||| |||| ||||| Sbjct 11967 CCAATCGGAGCGAGGATGTTGGCATTGTTTGCGCCGCAGAAGTCTTGCGCCAGATTGACG 11908 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 |||||| ||| | || ||||| || || || || || || || || | ||||| || Sbjct 11907 ATCGTAGATTGCAAACTGGCCTCGCCGTGATGGTATGCGGTGTGTTCACCAACGTAACCA 11848 Query 117485 GCCAGCTGAGCCACCTTCA 117503 |||| || || |||| || Sbjct 11847 GCCAATTGCGCAACCTGCA 11829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119084 TTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGC-TCCTCGTCGTT 119142 ||||| ||||| |||||||| ||||| || ||||| ||||| | ||| |||||||||| Sbjct 9670 TTGGCCAGCTTTGCACCGTAGCCGTTGCGTCCACCAGTCAC-CTTTGCCTCCTCGTCGTC 9612 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGATCCAAAT 119193 ||||||||| || | ||||| || ||||| ||||| ||||| |||| Sbjct 9611 GTAGTTGGACGATGTAAGCAGGTGTCCGAAGATCAGCTCTGGGATGTAAAT 9561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191471042800