Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1890 127 1e-24 seq1114 125 4e-24 seq3431 109 3e-19 seq2921 102 5e-17 >seq1890 Length=49107 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || ||||||||| ||||| || || ||||| || || Sbjct 41584 AGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGG 41643 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || |||||||| || || |||||||||||||| || | |||||| Sbjct 41644 CCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCC 41703 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| ||||| || || | || |||||| || || || | ||| Sbjct 41704 TTGTCCTGGATC-TTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGT 41762 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||| || || || |||||||| Sbjct 41763 GATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 41801 Score = 116 bits (128), Expect = 2e-21 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| ||| |||||| |||||||| || || || || || || Sbjct 46521 AGACGGAGCACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGG 46462 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| || || || || || | |||||||||||||| || | |||||| Sbjct 46461 CCGTCCTCAAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCC 46402 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| |||| || || || ||| | |||||||| || | || || || | | Sbjct 46401 TTGTCTTGGATC-TTCGTCTTTACGTTGTCGATTGTGTC--CGATGATTCAACCTCGAGG 46345 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| | || || || || |||||||| Sbjct 46344 GTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 46304 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||| || ||||| || || || || || || |||| ||| Sbjct 41821 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 41880 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | ||| |||||||||||||| | ||||||||||| | Sbjct 41881 AGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 41940 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| ||||| || || | ||| |||||| ||| || || | ||| || || || Sbjct 41941 ATC-TTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTT 41999 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || || || |||||||| Sbjct 42000 GCCGGTCAGCGTCTTGACGAAGATCTGCAT 42029 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| ||||||||| ||||| || || || || || || Sbjct 46293 AGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGA 46234 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || |||||||| || | ||| ||||||||||| || | |||||| Sbjct 46233 CCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCC 46174 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 46173 TTGTCCTGGATCTT 46160 Score = 95.1 bits (104), Expect = 8e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || ||||||||| ||||| || || ||||| || || | || ||| Sbjct 42049 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCA 42108 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | ||||||||||||||| || | ||||||||||| | Sbjct 42109 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGG 42168 Query 34618 ATCTT 34622 ||||| Sbjct 42169 ATCTT 42173 >seq1114 Length=26360 Score = 125 bits (138), Expect = 4e-24 Identities = 171/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| || | || || || ||||| || ||||| || || || Sbjct 18741 CCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 18800 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| || || || |||||||| || | ||||||||||||||| || Sbjct 18801 AGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGGG 18860 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || ||| | ||| ||||| |||||| Sbjct 18861 ATGCCCTCCTTGTCTTGGATC-TTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCAC 18919 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 || | ||| ||||| || || || | || |||||||| ||||||||| || ||| Sbjct 18920 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATGATGTTTG 18975 >seq3431 Length=10244 Score = 109 bits (120), Expect = 3e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||| || ||||||||||| || ||||| || || || || || |||| || Sbjct 1114 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1173 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| |||||||| || | ||||| |||||||| || | ||||||||||| | Sbjct 1174 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1233 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || || || ||| | || ||||| | |||||| || | ||| ||||| || Sbjct 1234 ATC-TTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTT 1292 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| | || || || || |||||||| ||| Sbjct 1293 GCCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1326 >seq2921 Length=71014 Score = 102 bits (112), Expect = 5e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || ||||| || || |||| || || || Sbjct 18131 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGC 18190 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| |||||||| || | |||||||||||| |||| || Sbjct 18191 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATC-TT 18249 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| |||||| || | ||| ||||| || || || Sbjct 18250 GGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 18309 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || |||||||||||| || Sbjct 18310 GAGGGTCTTGACGAAAATCTGCATGCTG 18337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314715844939538