Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1890 136 3e-27 seq2921 105 6e-18 >seq1890 Length=49107 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || ||| | || Sbjct 41801 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 41742 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || || ||||| || ||||| || || || ||| Sbjct 41741 GACACCATCGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 41682 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| || | |||||| | || |||| || |||||| Sbjct 41681 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAAC 41622 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||||||||| | || ||||| ||||| | || |||||| Sbjct 41621 ATCCAAAAGGAGTCGACACTCCACTTGGTCCTGCGTCTCCGCGGTGGC 41574 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || | || Sbjct 42029 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCA 41970 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || ||||| || ||||| || || || ||| Sbjct 41969 GACACCATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 41910 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || || | || ||| || || | ||||| |||||| Sbjct 41909 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAAC 41850 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| | || |||| ||||| || Sbjct 41849 ATCCAGAAGGAGTCGACACTCCACTTGGTCCTTCGCCTGCGCGGTGGTAT 41800 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || ||| | || Sbjct 46304 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 46363 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || ||||| || || || ||| Sbjct 46364 GACACAATCGACAACGTAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAA 46423 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| ||| | || ||| | ||| | || || |||||| Sbjct 46424 CAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAAC 46483 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| || | || ||||| | ||| | || |||||| Sbjct 46484 ATTCAGAAGGAGTCCACACTCCACTTGGTGCTCCGTCTCCGCGGTGGC 46531 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || ||||| ||||||||| | || || || || || || | || || | || || Sbjct 42245 GTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGAC 42186 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || || || || || || ||||||||| | || Sbjct 42185 AACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCATC 42126 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | |||||| || || | || || | ||| ||||||| |||||||| ||||||||| Sbjct 42125 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGGAG 42066 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | || ||||| | || |||| ||||| || Sbjct 42065 TCGACCCTCCACTTGGTCCTTCGCCTGCGTGGTGGTAT 42028 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || ||||| || |||||| | ||||| || || || || | || ||| | || || Sbjct 46088 GTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGAC 46147 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || ||||| || || || ||||| ||| | || Sbjct 46148 AATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGATC 46207 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | |||||||| || | || ||| || || | ||||| |||||||| ||||||||| Sbjct 46208 TTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGGAG 46267 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || ||||| | ||| | || ||||| || Sbjct 46268 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 46305 >seq2921 Length=71014 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || || || ||||| | || Sbjct 18334 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTC 18275 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| || || || ||||| || || || || || || || Sbjct 18274 CGACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 18215 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| | || |||| || ||||| Sbjct 18214 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 18155 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | || | || |||| ||||| Sbjct 18154 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 18107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898904782720