Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16]
3,586 sequences; 28,841,097 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1890 111 1e-19
seq2921 102 6e-17
seq1114 89.7 3e-13
>seq1890
Length=49107
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || ||||| ||||| ||||| || |
Sbjct 41801 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 41742
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || ||||| | | ||||| || || | || || || ||
Sbjct 41741 GACACCATCGACAATGTCAAGACAAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 41683
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || ||||||||||| || || ||||||| || ||| | || |||||
Sbjct 41682 ACAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAA 41623
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| ||||| ||| | || || ||
Sbjct 41622 CATCCAAAAGGAGTCGACACTCCACTTGGT 41593
Score = 87.8 bits (96), Expect = 1e-12
Identities = 133/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681
|||||| || || || || || || || || ||||| || || ||| | ||||| | ||
Sbjct 46087 CGTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA 46146
Query 23682 -AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740
||| | || || || | | ||||| || || | || || || ||||| ||| | |
Sbjct 46147 CAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGA 46205
Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800
| ||||||||||| || || || |||| ||||| | ||| |||||||| ||||| |
Sbjct 46206 TCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGG 46265
Query 23801 AGTCCAC 23807
|||||||
Sbjct 46266 AGTCCAC 46272
>seq2921
Length=71014
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||||||||| || |||||||| ||||| || || || |
Sbjct 18333 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 18274
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || || | || || || || ||||| || || | || || || ||
Sbjct 18273 GACACGATCGACAACGTCAAGAC-CAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 18215
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || |||||||| || || || |||| |||||| | || |||||
Sbjct 18214 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 18155
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 18154 CATCCAGAAGGAGTCGAC 18137
>seq1114
Length=26360
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || ||||| || || |||||||| ||||| || || || |
Sbjct 18967 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCC 18908
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | | ||||| || || | || || || ||
Sbjct 18907 GACACGATTGACAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATCCCTCCGGACCA 18849
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||| | || ||||||||||| || || ||||||| || || | || |||||
Sbjct 18848 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACAA 18789
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || || ||
Sbjct 18788 CATCCAGAAGGAATCGAC 18771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337994827501688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |