Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1890 111 1e-19 seq2921 102 6e-17 seq1114 89.7 3e-13 >seq1890 Length=49107 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| ||||| || | Sbjct 41801 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 41742 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || ||||| | | ||||| || || | || || || || Sbjct 41741 GACACCATCGACAATGTCAAGACAAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 41683 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || ||||||||||| || || ||||||| || ||| | || ||||| Sbjct 41682 ACAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAA 41623 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||||| ||| | || || || Sbjct 41622 CATCCAAAAGGAGTCGACACTCCACTTGGT 41593 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681 |||||| || || || || || || || || ||||| || || ||| | ||||| | || Sbjct 46087 CGTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA 46146 Query 23682 -AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 ||| | || || || | | ||||| || || | || || || ||||| ||| | | Sbjct 46147 CAATGTCAAGACCAAGA-TCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGA 46205 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | ||||||||||| || || || |||| ||||| | ||| |||||||| ||||| | Sbjct 46206 TCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGG 46265 Query 23801 AGTCCAC 23807 ||||||| Sbjct 46266 AGTCCAC 46272 >seq2921 Length=71014 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || |||||||| ||||| || || || | Sbjct 18333 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 18274 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || || ||||| || || | || || || || Sbjct 18273 GACACGATCGACAACGTCAAGAC-CAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 18215 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || |||| |||||| | || ||||| Sbjct 18214 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 18155 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 18154 CATCCAGAAGGAGTCGAC 18137 >seq1114 Length=26360 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || |||||||| ||||| || || || | Sbjct 18967 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCC 18908 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | | ||||| || || | || || || || Sbjct 18907 GACACGATTGACAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATCCCTCCGGACCA 18849 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||||||||| || || ||||||| || || | || ||||| Sbjct 18848 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACAA 18789 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 18788 CATCCAGAAGGAATCGAC 18771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994827501688