Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq35 190 2e-43 seq32 152 5e-32 seq4 131 2e-25 seq25 127 2e-24 seq119 122 9e-23 seq142 93.3 4e-14 >seq35 Length=115666 Score = 190 bits (210), Expect = 2e-43 Identities = 375/551 (68%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGC---TCTTC 116928 ||||||| | ||||| || | || || |||||||||||| || | ||| ||| | Sbjct 64401 GGAGAACATCCACTCTGAGACATACTCTCTCCTCATCGACACATATATTCGCGACTCTGC 64460 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | || || |||| ||||||||||||| || || |||||| | || || Sbjct 64461 GCAACGCGAGTACC---TGTTCGACGCCATCGAGACCATTCCCGTCGTCAAGCAAAAAGC 64517 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||||||||| | || |||||| || || || | | || | ||||||||| | || Sbjct 64518 CGAGTGGGCTATCCGATGGATCAGCGACACCCAGTCGACATTTGCTGAGCGCCTGATTGC 64577 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || |||||||||||| ||||||| || ||| || || |||| |||||||| || Sbjct 64578 CTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGCTGAA 64637 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| ||||| || |||||||||||||| ||| || ||||| || | | ||||| || Sbjct 64638 GAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACGAAGG 64697 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-GAGCGCGG 117227 ||||| |||||||||||| |||||||| || | | |||| || | | || Sbjct 64698 CCTGCACACCGACTTTGCCTGCCTGCTGTTCGGCCACCTCAAGAAGCGCCCACATCCCGA 64757 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | | || ||| | | ||| ||||| |||| || || ||||| ||||| | Sbjct 64758 GACTGTGCTGAGA-ATCATTAGCGAGGCGGTGACCATTGAACAAGCTTTCCTGACCGATG 64816 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 | ||||| || ||| | || | || | |||| | || ||||||||||| | Sbjct 64817 CTCTGCCAGTATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTACATCGAGTTTG 64876 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 | |||||| | || ||| | ||| | || ||||||||||| || | ||||| Sbjct 64877 TTGCCGACCGTCTACTGGTTTCGCTTGGTAACGAGAAGCACTACAATGCGACGAACCCCT 64936 Query 117408 TGGACTTTATG 117418 | ||||||||| Sbjct 64937 TCGACTTTATG 64947 Score = 187 bits (206), Expect = 3e-42 Identities = 182/234 (78%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||||| || ||| | |||||| Sbjct 64082 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACCGCTGAAGAGATCGACCTG 64141 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||||| | ||| ||||| || ||||||||||||||||||| ||||||| Sbjct 64142 TCCAAGGACATGCACGATTGGGATAACCGGCTGAACGACAACGAGCGCCACTTCATCAGC 64201 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| || || || ||||| || ||||| ||||| || |||||||| Sbjct 64202 CACGTCCTCGCCTTCTTTGCTGCTTCAGACGGAATTGTCAATGAGAACCTTGTCGAGCGA 64261 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| | ||||| || | || ||||| || |||||||||||||| |||||| Sbjct 64262 TTCAGTTCCGAGGTACAAGCAGCTGAGGCCCGATGCTTCTACGGCTTCCAGATC 64315 >seq32 Length=118755 Score = 152 bits (168), Expect = 5e-32 Identities = 178/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| ||||| || || ||| |||| |||||| | || Sbjct 111472 ATGCAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTCC 111413 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| || ||| ||||||| Sbjct 111412 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCAA 111353 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| || | |||||||||| Sbjct 111352 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 111293 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTTGCATGA 40928 |||||||||||| |||| || || || || | ||| | | || ||| ||| ||| || Sbjct 111292 ATCCAGAAGGAGTCCACTCTCCACCTCGTCCTCCGCCTCCGTGGTGGC-GCTCGCAAGA 111235 >seq4 Length=308026 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| |||| || || || || Sbjct 60335 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCC 60394 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||| || ||||||| Sbjct 60395 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 60454 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | || || || ||||||||| Sbjct 60455 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTTTCGGACTACAAC 60514 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || ||| | ||| || | || || Sbjct 60515 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 60561 >seq25 Length=137175 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 40701 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA 40760 ||| || || ||||| || || || |||||| |||| || || || |||||| | | | Sbjct 84239 CGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGA 84180 Query 40761 -AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 |||| ||||| || || | ||||| |||||||| || ||||||| ||||| || | Sbjct 84179 CAACG-TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGA 84121 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| ||||| ||||| || |||| || || ||| ||| |||||||||||||||| Sbjct 84120 TCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAGG 84061 Query 40880 AGGCCACGCTGCATCTAGT 40898 || |||| || || || || Sbjct 84060 AGTCCACCCTCCACCTCGT 84042 >seq119 Length=54761 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| |||| || || || |||||| | | | | ||||| Sbjct 54576 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCCGACACCATTGACAATGTCAAGACC 54635 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||| || ||||||| ||||| || || | ||| ||||| Sbjct 54636 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGCCTGATTTTCGCCGGCAAG 54695 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| || |||||||||||||||||||||| |||| || || Sbjct 54696 CAGCTTGAAGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 54755 Query 40894 CTAGT 40898 || || Sbjct 54756 CTTGT 54760 >seq142 Length=44629 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||| || ||||||| || || ||||||| ||| || || |||||||| || Sbjct 44629 CAAGGAGGGCATTCCTCCGGACCAACAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAAGA 44570 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || || ||||||||||||||||||||| |||| || || || || Sbjct 44569 CGGACGAACTCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTCCACCTTGT 44516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214260335920