Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq32 132 4e-26 seq142 105 5e-18 seq119 91.5 1e-13 >seq32 Length=118755 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| |||| |||| |||| || || || Sbjct 111269 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTG 111328 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||||||||| || || | |||||||||||| || || Sbjct 111329 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTT 111388 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | || ||||| | |||||| |||||||| || Sbjct 111389 GGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGT 111448 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| || |||||||||||| || Sbjct 111449 GAGAGTCTTTACGAAGATTTGCATGGTG 111476 >seq142 Length=44629 Score = 105 bits (116), Expect = 5e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| || |||||||||||| ||||||||| || ||| |||| || | Sbjct 44289 CAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAA 44348 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||||||||| || | ||||||||||| ||||| | |||||||||||| | Sbjct 44349 GCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGA 44408 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | ||||| ||| || || | ||| || ||||||| Sbjct 44409 TCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGC 44468 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| ||||| || ||||| ||||| Sbjct 44469 CGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| ||| || |||| ||||| || Sbjct 44521 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCGTCCGTCTTCCAGCTG 44580 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 ||||||||||| || | ||||||||||| ||||| | ||||||||| Sbjct 44581 CTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTG 44629 >seq119 Length=54761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 54755 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCAAGCTG 54696 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| || |||||||| ||||| | |||||||||||| ||| || Sbjct 54695 CTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 54636 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| ||| ||||| | || || |||||||| || Sbjct 54635 GGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTGCCGGT 54576 Query 45313 CAGAGTCTTCACA 45325 || ||||| ||| Sbjct 54575 CAAGGTCTTAACA 54563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071506911107