Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 363 1e-95 seq35 136 4e-27 seq32 122 8e-23 >seq23 Length=147171 Score = 363 bits (402), Expect = 1e-95 Identities = 1171/1802 (65%), Gaps = 60/1802 (3%) Strand=Plus/Minus Query 22112 ACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTC 22171 || || ||||| ||||| || ||||| || ||| || || || || | ||||||||| Sbjct 140796 ACGGTGAACTGGATGGCATTGGCGGCAGGACGGGTTCGGAGGTAGTATGTTCCCGTCTTC 140737 Query 22172 AGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG------C 22225 |||||| ||||||| |||| || || || ||||| || ||| | || || | Sbjct 140736 AGACCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGTTGACCAAAGCTGGGTGCCTGC 140677 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | || |||| || | | ||| || | ||| ||||||||||| ||||||||| Sbjct 140676 AGGTGGATGTTCAGACTTTGCGATTGGCA------GATGAACGCTCCTCGGTCGGCGGCC 140623 Query 22286 ATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | ||| | || | | ||| || ||||| || |||||||| || | |||| Sbjct 140622 ATGTCTATGA-TGACCTTTTGCGAGATCTCCCAGACCGTCTTGTAGAGAGCCTTGATG-- 140566 Query 22345 TAACGGTATCGATT--CGATCC---TCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 |||| || | || | | || | || || | | ||||| || Sbjct 140565 ---CGGTCAGGAATGCCGGGCACGTTTTGAATCGAGCCACCGTGGGCAATGATACGGTTC 140509 Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC-CAGATGAC---GGTT 22455 || ||| |||||||||| ||| | || || | | || ||| | | |||| Sbjct 140508 TTCATCTGCTCGTTCCACAGACC--TTGC--TCCACGAGCTCACGCAGGAGCCAAGGGTT 140453 Query 22456 CACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTC 22515 || ||||| |||||||||| || ||| ||||| ||||| |||| ||| | || || Sbjct 140452 GACGACTTGGAACTCGCCGGCCAGGACTCGGCGGGTGTAAAGGTTGCTGGTGTAAGGCTC 140393 Query 22516 GAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575 ||| | || ||| || || ||||||| |||||| || |||||||| || || | || Sbjct 140392 GAAGCACTCGTTGAAGCCAAGAATCTGAGAGGTCGAGGCAGTCGGCATGGGTGCGAGGAG 140333 Query 22576 TAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAG 22635 |||||||| | | |||||| | | || || ||||||| | ||||||||| || Sbjct 140332 GAGCGAGTTGCGGAGGCCGTGGGTGGCGATCTTCTGCTTGAGCTCGGCCCAGTCCCAGAG 140273 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 | || || || | |||| | |||||||| | | |||| || || ||||| Sbjct 140272 GCTGCTGGGTGTAAC---GCCCCAAAAGTCGTATTGGAGCTCGCCCTTGCTGGCAGGGCT 140216 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGC-CTCCAAC 22753 ||| |||| || ||||| | || | || || |||| ||||| | || ||| | Sbjct 140215 GCCGGCGTATGTCTCGTAGGTGCCC-AGCTCAGCAGCAATCTCGCA-CGAGCGCTCGAGA 140158 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCG 22813 ||| ||| || |||||||| ||||||| |||| | | ||| || ||| ||| Sbjct 140157 GCGGCGTGGTAGATAGTCTCAAAGATTTGAATGTTAAGCTTCTTGGCCTCGGGGCTGTCG 140098 Query 22814 TACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | | |||| | ||| |||| ||| || || || | ||| | || || ||||| || || Sbjct 140097 AAAG-CATATCCCATGATCATGAAGGCATCGGCGAGACCGTTGACACCGATACCAATGGG 140039 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 |||| | || ||| || |||||||| | || || | || ||||| | Sbjct 140038 ACGGTGGCGGAAGTTGGACTTCTTAGCCTCGGGAACGGGGTAGTAGTTGATGTCGATGAT 139979 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||||||||| | | |||| || || | | |||||||| Sbjct 139978 CTTGTTCAAGTTGCCGCAGACAACCTTGGTGACCTCATGGAGCTTCTTGAAGTCGTATGT 139919 Query 22993 GCCCGA------TTGTACAACAAACTTGTTG---------ACGGCGAT-CGAGGCAAGAT 23036 || | ||| | | ||| || | ||| || | || |||| | Sbjct 139918 GCGGGTGTTGGTTTGGTTGTCGTAGTTGATGTAGGAGGGGAGGGCCATGCTAGCCAAG-T 139860 Query 23037 TGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTAC 23096 |||| || || ||||| || | |||| || | || || || || | ||| | Sbjct 139859 TGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATCTCAGTGCACAAGTTGGAGC 139800 Query 23097 ACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCA 23156 |||| || || || | || |||||||| || || ||| | ||||||||||||| Sbjct 139799 ACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGCA 139740 Query 23157 TGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT 23216 || | || |||| |||||| ||| | ||||| ||| || ||| | | ||||| | Sbjct 139739 TGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTTTGAGCCT 139680 Query 23217 GAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCG 23275 | || ||| ||| |||||| | ||||||||| | ||| | || || || || Sbjct 139679 TGATGGTGCG-ACGGGCCTTGCCTTCCTTCTCGTACTTCTCGTAGAGGGCCTCGAACTCC 139621 Query 23276 GCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAG 23335 | ||||| |||||| || ||||| | | | || ||||| ||| |||| | Sbjct 139620 TCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATCAGAGACCACTCGCCG 139561 Query 23336 TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGG 23395 | | ||| || | |||| || | || || ||||| ||||||||||| || || || Sbjct 139560 TTCTGTTCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGCGTAGAAGAGCTCTCGA 139501 Query 23396 GCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCA 23455 || || |||||||| |||||| |||||| | || | || || || ||||| | Sbjct 139500 GCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGACGTCAGAG 139441 Query 23456 TGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACG 23515 ||||| ||||| | ||| | |||||| ||||| || | ||| ||||| || || |||||| Sbjct 139440 TGCCAGGGCTCAACGTAGATGGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACG 139381 Query 23516 TAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCT 23575 || || || ||||||||||| |||| ||||| ||||| | |||||||| |||| Sbjct 139380 TATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATCCCGTTGGAGAAGCCGTTG 139321 Query 23576 ACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635 |||||| | || || | | || | | ||||| || || ||| || || ||| Sbjct 139320 GTGCCCGCGATGTAGGAGCCAGTGCCACGGATGCAGTGAATGTTGAGACCAATACCACCG 139261 Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 | | || |||||| ||||| || || ||||||||||| || |||||| ||| Sbjct 139260 GCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCTTCGATGGAGTCG 139201 Query 23696 TCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAAC 23755 || || | | ||||| ||| |||||||||| || | ||||| || |||| ||| Sbjct 139200 TCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTGGGTGTGCCGGCGTTGAAG 139141 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCG 23815 || || || ||| || || ||||| | |||||| || ||||| || |||||||| Sbjct 139140 AGAGTGGGCGAGGCATGTGTGAAGTACTTCTCCGACATCAGGTTGTATGTCTCGATGGCA 139081 Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTC 23875 || || ||||| ||||| ||||||| |||||| ||||||| ||||| ||| || | | Sbjct 139080 GCGTCGATGTCTCGGCCGTGGATACCGACGGCGACACGCATCAGCATGTGTTGCGGCCGC 139021 Query 23876 TC 23877 || Sbjct 139020 TC 139019 >seq35 Length=115666 Score = 136 bits (150), Expect = 4e-27 Identities = 286/422 (68%), Gaps = 22/422 (5%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATC 57935 |||||| |||| ||||| || || |||| ||| |||| || || |||||| | ||| Sbjct 64474 CTGTTCGACGCCATCGAGACCATTCCCG---TCGTCAAGCAAAAAGCCGAGTGGGCTATC 64530 Query 57936 AAATGGATAAAAAGCGCCAC---GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992 |||||| | ||| ||| | | || || || ||| | || || || || || ||| Sbjct 64531 CGATGGATCA---GCGACACCCAGTCGACATTTGCTGAGCGCCTGATTGCCTTTGCTGCC 64587 Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052 ||||| || || ||||| || ||| |||||| | || |||||| ||||||| ||||| Sbjct 64588 GTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGCTGAAGAAGCGCGGT 64647 Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112 ||||||||||||||||| || || ||| |||| || ||||| || || || || Sbjct 64648 CTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACGAAGGCCTGCACACC 64707 Query 58113 GATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-----CGACGCGGGATCGCA 58167 || ||||| ||||| ||| | ||| |||| || | | | || || | Sbjct 64708 GACTTTGCCTGCCTGCTGTTCGGCCAC---CTCAAGAAGCGCCCACATCCCGAGACTG-- 64762 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 | || || || | ||||||||| | || ||| | | || | ||||| || || | Sbjct 64763 TGCTGAGAATCATTAGCGAGGCGGTGACCATTGAACAAGCTTTCCTGACCGATGCTCTGC 64822 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 | || | || |||| |||||| ||||| | ||||||| ||||||||||||| Sbjct 64823 CAGTATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTACATCGAGTTTGTTGCCG 64882 Query 58288 AC 58289 || Sbjct 64883 AC 64884 >seq32 Length=118755 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| |||||||||||||| || ||||| || || ||| |||| || ||| | || Sbjct 111473 CATGCAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTC 111414 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || || || |||||||| || | || || |||| Sbjct 111413 CGACACCATCGACAATGTCAAGACCAAG-ATCCAAGACAAGGAGGGTATTCCCCCGGACC 111355 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 | ||||| || || ||||| ||||| ||| | || ||| | ||| ||||||| || | Sbjct 111354 AACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACA 111295 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || || || ||||| || || || || Sbjct 111294 ACATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 111261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762126214640