Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq35 102 2e-16 seq23 87.8 4e-12 >seq35 Length=115666 Score = 102 bits (112), Expect = 2e-16 Identities = 271/412 (66%), Gaps = 3/412 (1%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 ||||||||||||| || || || |||||||| ||| | || || ||||| || ||| Sbjct 64574 TTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGC 64633 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | |||| || || |||| ||| |||||| | ||| | |||| Sbjct 64634 TGAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACG 64693 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 |||| || || ||||||||| ||| ||||||| | | | | || ||| Sbjct 64694 AAGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCGGCCA-CCTCAAGAAGCGCCCACAT 64752 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | |||| | | || ||| | | || || || |||||||||| || || | Sbjct 64753 CCCGAGACTG--TGCTGAGAATCATTAGCGAGGCGGTGACCATTGAACAAGCTTTCCTGA 64810 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | | | ||||| || | | | || |||||| | | |||||| |||||||| | Sbjct 64811 CCGATGCTCTGCCAGTATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTACATCG 64870 Query 102219 AATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCA 102278 | ||||| || || ||| ||||| | || || |||||||| |||| || | Sbjct 64871 AGTTTGTTGCCGACCGTCTACTGGTTTCGCTTGGTAACGAGAAGCACTACAATGCGACGA 64930 Query 102279 ACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 |||||||| || ||||| || ||||| || | ||||| ||||| || Sbjct 64931 ACCCCTTCGACTTTATGGAGAACATTTCTCTGCAAGGGAAGACGAACTTCTT 64982 >seq23 Length=147171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 94873 AGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCA 94932 ||||||||||| || || || || || ||| || || || || ||||| || ||| Sbjct 139185 AGGAAGCACGAAGACAGCTGAGGGTTGGGTGTGCCGGCGTTGAAGAGAGTGGGCGAGGCA 139126 Query 94933 TGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGAT 94992 || || || || | | |||||| || | ||||| || ||| ||| | ||||||| Sbjct 139125 TGTGTGAAGTACTTCTCCGACATCAGGTTGTATGTCTCGATGGCAGCGTCGATGTCTCGG 139066 Query 94993 CCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCA 95040 ||||| || ||||| || |||||||| | ||||| || || |||||| Sbjct 139065 CCGTGGATACCGACGGCGACACGCATCAGCATGTGTTGCGGCCGCTCA 139018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574275172485