Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq23 156 5e-33 seq35 116 5e-21 >seq23 Length=147171 Score = 156 bits (172), Expect = 5e-33 Identities = 590/916 (64%), Gaps = 10/916 (1%) Strand=Plus/Minus Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 |||| || || || || ||||||| || | | |||| || ||||||||||| | Sbjct 139866 GCCAAGTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATCTCAGTGCACAAG 139807 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 || |||||||| || || | || | || || ||| ||| || ||||| Sbjct 139806 TTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTG 139747 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || || ||||| ||| | ||||| || |||| | || | || || | ||||| | Sbjct 139746 TAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTT 139687 Query 63132 CGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTA--TAGAGTATACAATCGT 63188 ||||||| || | || | | |||| || | ||||| | ||| | | Sbjct 139686 TGAGCCTTGATGGTGCGACGGGCCTTGCCTTCCT-TCTCGTACTTCTCGTAGAGGGCC-- 139630 Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || | || | | | | | || || || | || ||||||| ||| Sbjct 139629 TCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATCAGAGAC 139570 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| | | |||| ||||| || | || |||||||| ||||| || Sbjct 139569 CACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGCGTAGAAG 139510 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 || |||| | || ||||| || || ||||| || ||||||||| | | Sbjct 139509 AGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAG 139450 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | ||||| ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 139449 ACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCCGGGACGCTTGTTGCCACCT 139390 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | ||||| ||||||||| || || |||| || ||| || | ||| ||||| || Sbjct 139389 TGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATCCCGTTGGAG 139330 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACC 63547 | || ||||| || | ||| ||| ||| || |||| || | | | || | ||||| Sbjct 139329 AAGCCGTTGGTGCCCGCGATGTAGGAGCCAGTGCCACGGATGC-AGTGAATGTTGAGACC 139271 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || | || || | ||||| || | ||||| ||||| ||||| Sbjct 139270 AATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCTTC 139211 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGAGTAGTTC 63666 ||| || || ||||| | | || || || ||||| || | | | || || | Sbjct 139210 GATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTGGGT-GTGC 139152 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | || || || | || || || || || || || | || || || | || ||||| | Sbjct 139151 CGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAAGTACTTCTCCGACATCAGGTTGTATG 139092 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 |||| || || | ||| || || | || || || || ||||||||||| | ||||| Sbjct 139091 TCTCGATGGCAGCGTCGATGTCTCGGCCGTGGATACCGACGGCGACACGCATCAGCATGT 139032 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 | || || | ||| ||| ||| || || || || ||| ||| |||| | ||| | Sbjct 139031 GTTGCGGCCGCTCAGCAACCTTGCCATTGATGCGCAGCAGGTATGATCTTTCGAGAGTCT 138972 Query 63847 TAAAACCAAAATAGTT 63862 | || ||||| ||||| Sbjct 138971 TGAAGCCAAAGTAGTT 138956 >seq35 Length=115666 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || || || ||| |||||| || ||||||| ||||| | || || || Sbjct 64727 AACAGCAGGCAGGCAAAGTCGGTGTGCAGGCCTTCGTCTCGGCTAATCAGCTCATTCGAG 64668 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| || || ||||| || |||||||| ||||| || || || || Sbjct 64667 AAGGTCAGGCCGGGCATCAGACCGCGCTTCTTCAGCCAAAAGATGGACGCAAACGAGCCA 64608 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 || |||||||| || || || |||||||||||||| || | ||| Sbjct 64607 GAGAAGAAGATGCCCTCGACGGCAGCAAAGGCAATCAGGCGCTC 64564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811561623760