Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq35 149 9e-31 seq23 145 1e-29 seq17 98.7 1e-15 >seq35 Length=115666 Score = 149 bits (164), Expect = 9e-31 Identities = 400/599 (67%), Gaps = 27/599 (5%) Strand=Plus/Plus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315 |||||| | ||||| || | |||||| || || |||| || |||||||| | || Sbjct 64402 GAGAACATCCACTCTGAGACATACTCTCTCCTCATCGACACATATATTCGCGACTCTGCG 64461 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGC 125374 ||||| | || || || |||| ||||| || | || ||| | | |||||| | Sbjct 64462 CAACGCGAGTACCTGTTCG---ACGCCATCGAGACCATTCCCGTCGTCAAGCAAAAAGCC 64518 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| || || |||||| ||| | |||| | | || || | ||| | || Sbjct 64519 G-AGTGGGCTATCCGATGGATCAGCGACACCCAGTCGACATTTGCTGAGCGCCTGATTGC 64577 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || ||||| |||||||||||||| || || |||||| ||||||||||||| || Sbjct 64578 CTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGCTGAA 64637 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| || |||||||| ||||| | || ||| | || |||||||| || Sbjct 64638 GAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACGAAGG 64697 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 ||| ||| ||||||||| || ||||| || || || | | | || ||| Sbjct 64698 CCTGCACACCGACTTTGCCTGCCTGCTGTTCGGCCAC---CT-CAAGAAGCGCCCACATC 64753 Query 125615 CAGCGA-TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 | | || || | | | | |||| | ||| || |||| || ||||||| || | Sbjct 64754 CCGAGACTG---TGCTGAGAATCATT---AGCGAGGCGGTGACCATTGAACAAGCTTTCC 64807 Query 125674 TAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | ||||| | || || || | || |||| ||||||||| | ||| ||| ||||| Sbjct 64808 TGACCGATGCTCTGCCAGT-ATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTAC 64866 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAAC 125789 || |||||||| || || ||||||||| | | | |||| | ||| ||||| Sbjct 64867 ATCGAGTTTGTTGCCGACCGTCTACTG---GTTTCGCTTGGTAACGAGAAGCACTACAAT 64923 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 || | ||| ||||| || || ||| | ||| || || | || ||||| ||||| || Sbjct 64924 GCGACGAACCCCTTCGACTTTATGGAGAACATTTCTCTGCAAGGGAAGACGAACTTCTT 64982 Score = 102 bits (112), Expect = 1e-16 Identities = 174/246 (71%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||| | |||||| |||| ||| Sbjct 64082 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACCGCTGAAGAGATCGACCTG 64141 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||||| | || ||| || | ||||| | || || Sbjct 64142 TCCAAGGACATGCACGATTGGGATAACCGGCTGAACGACAACGAGCGCCACTTCATCAGC 64201 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| | | ||||||||||| | || || ||||| ||||| || || | ||| || || Sbjct 64202 CACGTCCTCGCCTTCTTTGCTGCTTCAGACGGAATTGTCAATGAGAACCTTGTCGA-GCG 64260 Query 125198 ATTCTCTCAAGAGTTGACCA-TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 |||| | ||| | || | | |||| ||||| ||||| ||||| ||||||| Sbjct 64261 ATTCAGTTCCGAGGT-ACAAGCAGCTGAGGCCCGATGCTTCTACGGCTTCCAGATCATGA 64319 Query 125257 T-TGAG 125261 | |||| Sbjct 64320 TGTGAG 64325 >seq23 Length=147171 Score = 145 bits (160), Expect = 1e-29 Identities = 336/504 (67%), Gaps = 2/504 (0%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| | ||| || | ||||| ||||| || | ||||| | | ||| Sbjct 139319 ACCAACGGCTTCTCCAACGGGATTGTGCCCATGCTGCGAGTCTACAACAACACCGCTCGA 139378 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || ||||| | ||| ||||| | || || ||| Sbjct 139379 TACGTCGACCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATCTACGTTGAGCCCTGG 139438 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| | ||||| || || || |||| | ||||| ||| ||| || |||| ||| Sbjct 139439 CACTCTGACGTCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGA 139498 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || || || |||||| | || || |||||||||||| | ||| | | Sbjct 139499 GCTCGAGAGCTCTTCTACGCTCTCTGGATTCCCGACTTGTTCATGAAGAGAGTCGAACAG 139558 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| | ||| || ||||||||| || || |||||||| |||| | ||| Sbjct 139559 AACGGCGAGTGGTCTCTGATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACGTGTACGGC 139618 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165 || ||||| |||||| ||| | |||||| | || ||| | ||| || | | Sbjct 139619 GAGGAGTTCGAGGCCCTCTACGAGAAGTACGAGAAGGAAGGCAAGGCCCGTCGCACCA-T 139677 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | | || | | | || ||| | |||||| | ||| ||| |||||||| | ||| | Sbjct 139678 CAAGGCTCAAAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGCAATCCCTT 139737 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| ||||||||||| | | || ||||| |||||| || | || |||||||| Sbjct 139738 CATGCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAA 139797 Query 97286 GGGCTCCAATCTGTGCACGGAAAT 97309 | ||||||| ||||||| || || Sbjct 139798 GTGCTCCAACTTGTGCACTGAGAT 139821 >seq17 Length=164878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || ||||| ||||| ||||||||||||||||||||| | |||| || |||| ||| | Sbjct 147562 GAAGGCGACCTGGGCCCAGTGTACGGATTCCAGTGGCGACACTTTGGAGCCAAATATATC 147503 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACAC 70182 || ||||| |||||||| || || || ||||| || ||| | || || ||| ||| Sbjct 147502 GATTGCGACACAGACTACTCTGGACAAGGTGTAGACCAACTGGCCGA-GTGCATACACAA 147444 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAG 70238 |||| | ||||||||| ||| | | || || || || | ||||| || |||| Sbjct 147443 GATCAAAAACAATCCAACGGATCGCCGCATTGTTTTGAGCGCCTGGAACCCAGCAG 147388 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 70316 ATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375 ||||| ||| || | |||| |||| ||||| || || || |||||||| |||||| || Sbjct 147202 ATGTACCAGCGGTCTTGCGACTTGGGTCTCGGCGTGCCTTTCAACATTGCCAGCTATGCT 147143 Query 70376 ATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACC 70435 | ||||||| ||||||||||| | || ||| |||| || ||||| | | Sbjct 147142 CTCCTGACGCATATGATTGCTCAGGTGACGGGCTGCGAAGCCGGAGACTTCGTGTTGAGC 147083 Query 70436 ATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAG 70480 || ||||| || ||||||||| ||||| ||||||| || ||| Sbjct 147082 ATGGGCGATGCGCACGTGTATCGCGATCACGTCGAGCCTTTGAAG 147038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052095094920