Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq142 113 1e-19 seq4 109 1e-18 seq32 107 4e-18 seq119 96.9 8e-15 >seq142 Length=44629 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || ||||| | || || || ||||||||||| ||||| || ||||| | Sbjct 44279 AGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGG 44338 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || || ||||| || || || || | |||||| || ||||| || || || Sbjct 44339 CCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCC 44398 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGT 104520 || ||||| ||||| | || || || || | || || | ||| || || || || || Sbjct 44399 TTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTC-CGAGGACTCGACTTCGAGGGT 44457 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || || |||||||| Sbjct 44458 GATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 >seq4 Length=308026 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || ||||| | || || Sbjct 60547 AAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATC 60488 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | |||||| || ||||| || || || || || Sbjct 60487 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTC 60428 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| | || ||||| || | ||| ||| | || ||||| || || ||||| Sbjct 60427 CTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGT 60368 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 60367 CTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 >seq32 Length=118755 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| ||||| | |||||| || || || || || Sbjct 111276 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 111335 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||| || || || || || || || || || ||||| | || Sbjct 111336 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTG 111395 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| ||||| || ||||||||||| || || || || Sbjct 111396 ACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTC 111455 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 111456 TTTACGAAGATTTGCAT 111472 >seq119 Length=54761 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | |||||||| || || || || Sbjct 54748 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCAAGCTGCTTGCCG 54689 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||||| || ||||| || || || || ||||||||||| | || Sbjct 54688 GCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGTCTTG 54629 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| || || || ||||| || || | || Sbjct 54628 ACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTC 54569 Query 104543 TTTACA 104548 || ||| Sbjct 54568 TTAACA 54563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387084992036