Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14]
767 sequences; 20,105,270 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq32 84.2 2e-11
seq4 82.4 6e-11
>seq32
Length=118755
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
|| || ||| |||||| || |||||||| || || | || || ||||||| |||||
Sbjct 111270 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTG-CGACCGTCCTCGAGCTG 111328
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || | || | ||||| || ||| || | || |||||||| || ||
Sbjct 111329 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTT 111388
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | ||||| |||| ||| || ||||| || || || || |||||
Sbjct 111389 GGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGT 111448
Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTC 48732
|||||| || || || || ||||| |||||
Sbjct 111449 GAGAGTCTTTACGAAGATTTGCATGGTGTC 111478
>seq4
Length=308026
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||| |||||| || |||||||| || | || || || | ||||| |||||
Sbjct 60537 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA-AAGAGTACGGCCATCCTCGAGCTG 60479
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || | || | ||||| || ||| || | | ||||||||| || ||
Sbjct 60478 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 60419
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | ||||| |||| |||||| ||||| || || || ||||| ||
Sbjct 60418 GGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGT 60359
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
||| || || || |||||||||||
Sbjct 60358 GAGGGTCTTGACGAAAATCTGCAT 60335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421247262222767
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |