Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq32 84.2 2e-11 seq4 82.4 6e-11 >seq32 Length=118755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | || || ||||||| ||||| Sbjct 111270 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTG-CGACCGTCCTCGAGCTG 111328 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||| || ||| || | || |||||||| || || Sbjct 111329 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTT 111388 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| |||| ||| || ||||| || || || || ||||| Sbjct 111389 GGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGT 111448 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 |||||| || || || || ||||| ||||| Sbjct 111449 GAGAGTCTTTACGAAGATTTGCATGGTGTC 111478 >seq4 Length=308026 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || | || || || | ||||| ||||| Sbjct 60537 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA-AAGAGTACGGCCATCCTCGAGCTG 60479 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||| || ||| || | | ||||||||| || || Sbjct 60478 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 60419 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| |||| |||||| ||||| || || || ||||| || Sbjct 60418 GGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGT 60359 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || ||||||||||| Sbjct 60358 GAGGGTCTTGACGAAAATCTGCAT 60335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247262222767