Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 250 6e-61 seq35 102 2e-16 >seq23 Length=147171 Score = 250 bits (276), Expect = 6e-61 Identities = 591/881 (67%), Gaps = 10/881 (1%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| | || | ||| ||||| || |||||||| | ||| ||| || ||||| Sbjct 138971 AAGACTCTCGAAAGATCATACCTGCTGCGCATCAATGGCAAGGTTGCTGAGCGGCCGCAA 139030 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | |||||||| || | |||||||| ||| || | || || || || || Sbjct 139031 CACATGCTGATGCGTGTCGCCGTCGGTATCCACGGCCGAGACATCGACGCTGCCATCGAG 139090 Query 363520 ACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAACAATGTACAATG 363577 ||||| || || | || | ||| ||||| || ||| |||| || | | ||| | Sbjct 139091 ACATACAACCTGAT--GTCGGAGAAGTACTTCACACATGCCTCGCCCACTCTCTTCAACG 139148 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 | || || | || || ||| ||||||| ||||| || | | ||||||||||| |||| Sbjct 139149 CCGGCACACCCAACCCTCAGCTGTCTTCGTGCTTCCTGGTCACCATGAAGGACGACTCCA 139208 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 |||| ||||||| ||||| || |||| || || | || ||||| ||| || || | Sbjct 139209 TCGAAGGTATCTACGACACCCTCAAGACCTGCGCCATGATAAGCAAGACTGCCGGTGGTA 139268 Query 363698 TTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGG-CACAGGGGG 363755 ||||| | || ||| | |||| ||| | | ||||| ||||| ||| || Sbjct 139269 TTGGTCTCAACATTCACTGCATCCGTGGCACTGG-CTCCTACAT-CGCGGGCACCAACGG 139326 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 | ||| || ||| | || |||||||| || || | |||| || || | |||||||| Sbjct 139327 CTTCTCCAACGGGATTGTGCCCATGCTGCGAGTCTACAACAACACCGCTCGATACGTCGA 139386 Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGA 363875 ||| ||||| ||||| || || ||||| || || | ||||| || | || Sbjct 139387 CCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATCTACGTTGAGCCCTGGCACTCTGA 139446 Query 363876 TATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGA 363935 | || ||||| || || ||||| || ||| || || ||||| | || || || || Sbjct 139447 CGTCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGAGCTCGAGA 139506 Query 363936 TCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA- 363994 || ||||| || || ||| || | ||| || |||||| | || || ||| | Sbjct 139507 GCTCTTCTACGCTCTCTGGATTCCCGACTTGTTCATGAAGAGAGTCGAA-CAGAACGGCG 139565 Query 363995 ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACT 364054 | ||||| || | ||||| |||| || || ||||| |||| || | || || || | Sbjct 139566 AGTGGTCTCTGATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACGTGTACGGCGAGGAGT 139625 Query 364055 ATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCAC 364114 | || || ||||| ||||| || ||| || ||||| ||| || || || | Sbjct 139626 TCGAGGCCCTCTACGAGAAGTACGAGAAGGAAGGCAAGGCCCGTCGCACCATCAAGGCTC 139685 Query 364115 AGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGT 364174 | ||||| |||| |||||| | || | |||| ||||| || | |||| ||| | | Sbjct 139686 AAAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGCAATCCCTTCATGCTCT 139745 Query 364175 ACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCA 364234 |||| || | ||||||||||||||||||| || |||| ||||| || || || Sbjct 139746 ACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCTCCA 139805 Query 364235 ACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || | || || ||||| || ||||||| ||||| || ||| Sbjct 139806 ACTTGTGCACTGAGATCATCGAATACAGTGCTCCTGATGAG 139846 >seq35 Length=115666 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 |||| || || || || ||||| ||||||| || || ||||| ||||| ||||| | | Sbjct 64556 CATTTGCTGAGCGCCTGATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGT 64615 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 || | ||||||||||| || || || | | ||||| || || || || || |||| Sbjct 64616 TTGCGTCCATCTTTTGGCTGAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATG 64675 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 || | ||||||||||| || || || || ||||| ||||| || |||| Sbjct 64676 AGCTGATTAGCCGAGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCT 64724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340791699794