Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq32 86.0 5e-12 seq4 86.0 5e-12 >seq32 Length=118755 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || | || || || | |||||| |||| ||||| | | Sbjct 111472 ATGCAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTCC 111413 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || || ||| Sbjct 111412 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCAA 111353 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||||||||| ||||| || | | | | ||||| || ||| Sbjct 111352 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 111293 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 111292 ATCCAGAAGGAGTCCAC 111276 >seq4 Length=308026 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| || ||| || | Sbjct 60335 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCC 60394 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 60395 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 60454 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||| | || ||||||||| ||||| |||| Sbjct 60455 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATG 60491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931981038885