Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq32 134 1e-26 seq35 123 2e-23 seq4 123 2e-23 seq142 122 8e-23 seq25 104 2e-17 >seq32 Length=118755 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | || | || |||||||| || |||||||| ||||| Sbjct 111245 GCCACCACGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 111304 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||| |||||||| || Sbjct 111305 CAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGG 111364 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | || |||| || |||| Sbjct 111365 AATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGAC 111424 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||||| || || ||||| ||||| |||||||| || |||||| Sbjct 111425 CTCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTTACGAAGATTTGCATG 111473 >seq35 Length=115666 Score = 123 bits (136), Expect = 2e-23 Identities = 321/481 (67%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 46097 GCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGC 46156 |||| ||| |||| ||||| || ||||||| | || | |||| || || |||| Sbjct 64509 GCAA-AAAGCCGAGTGGGCTATCCGATGGATCAGCGACACCCAGTCGACATTTGCTGAGC 64567 Query 46157 GTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCT 46216 | || | |||||||| || |||||| |||| || |||||| ||||| |||||| Sbjct 64568 GCCTGATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCT 64627 Query 46217 TTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCG 46275 ||| | || || | || | | |||||||||||||| || || |||||||| Sbjct 64628 TTTGGCTGAAGAAGCGCGGTC-TGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGC 64686 Query 46276 CGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACACTCGCGTGCA-CG 46333 || ||||| |||||||| || |||||||| || || || | ||| | | | | || Sbjct 64687 CGAGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCGGCCAC-CTCAAGAAGCG 64745 Query 46334 ACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGG 46393 | | | ||||| || |||||||| || | | ||||||||| ||||||| | | Sbjct 64746 CCCACAT----CCCGAGACTGTGCTGAGAATCATTAGCGAGGCGGTGACCATTGAACAAG 64801 Query 46394 AGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCG 46453 || | || | || ||||| | | ||| | ||||||||||| | | ||| Sbjct 64802 CTTTCCTGACCGATGCTCTGCCAGTATCACTGATCGGCATGAACGCCCGGCTGATGACTC 64861 Query 46454 ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTC 46513 | |||||||||||||| || ||||| || || || |||| | |||||| | Sbjct 64862 AGTACATCGAGTTTGTTGCCGACCGTCTACTGGTTTCGCTTGGTAACGAGAAGCACTACA 64921 Query 46514 ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTT 46573 | ||| || || || || |||||| | ||||| || ||| | || || || || || | Sbjct 64922 ATGCGACGAACCCCTTCGACTTTATGGAGAACATTTCTCTGCAAGGGAAGACGAACTTCT 64981 Query 46574 T 46574 | Sbjct 64982 T 64982 >seq4 Length=308026 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||| |||||||| || |||||||| || Sbjct 60561 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 60502 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | ||||| ||||||||||| Sbjct 60501 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGA 60442 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| |||||| | Sbjct 60441 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACC 60382 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || ||||| || || || || ||||||||||||||| Sbjct 60381 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 60334 >seq142 Length=44629 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| ||||| ||||| ||| | ||||| ||| || |||||||| || Sbjct 44300 GTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAAGCTGCTTTCCG 44359 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||| ||||||||||| || || || ||||| ||| || |||| Sbjct 44360 GCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 44419 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| || | |||||||| |||| ||| | ||| || ||||| || || Sbjct 44420 ACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 44479 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 44480 TTGACGAAGATCTGCAT 44496 >seq25 Length=137175 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||||||| | || || |||||| ||||||||||| Sbjct 84053 GGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGCTTGCC 84112 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||| || ||||||||||| || || || ||||| ||| || ||| Sbjct 84113 GGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGTCTT 84172 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | || |||| |||||| | |||| ||| | || || ||||| || || Sbjct 84173 GACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGT 84232 Query 131217 TTTTACG 131223 || ||| Sbjct 84233 CTTGACG 84239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008274577280