Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq35 131 2e-25 >seq35 Length=115666 Score = 131 bits (144), Expect = 2e-25 Identities = 226/326 (69%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||||||||||| |||| |||||| ||| || | Sbjct 64719 GCAGGCAAAGTCGGTGTGCAGGCCTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAG 64660 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||| || || ||||| |||||||| || || ||||| ||||| || || Sbjct 64659 GCCGGGCATCAGACCGCGCTTCTTCAGCCAAAAGATGGACGCAAACGAGCCAGAGAAGAA 64600 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACTGC 93269 || || || ||||| ||||| || | | || || ||||| | | | | | | || Sbjct 64599 GATGCCCTCGACGGCAGCAAAGGCAATCAGGCGCTCAGCAAATGTCGACTGGGTGTC-GC 64541 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||||| | |||||| |||||||||| ||| | || | || ||||| |||| Sbjct 64540 TGATCCATCGGATAGCCCACTCGGCTTTTTGCTTGACGACGGGAATGGTCTCGATGGCGT 64481 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 || ||||| || || | | || || || || ||||| ||||| | ||||| || Sbjct 64480 CGAACAGGTACTCGCGTTGCGCAGAGTCGCGAATATATGTGTCGATGAGGAGAGAGTATG 64421 Query 93390 TTTCAGAATGGACATTCTCCATTGCA 93415 | ||||| |||| |||||| || || Sbjct 64420 TCTCAGAGTGGATGTTCTCCCTTACA 64395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCG-TGATCTGCACTTCTTGAGAAAATCTCTC 93474 || ||||| |||||||| |||| || || | || | || || || | |||| ||| Sbjct 64314 ATCTGGAAGCCGTAGAAGCATCGGGCCTCAGCTGCT-TGTACCTCGGAACTGAATCGCTC 64256 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || || || |||||||| || || || || || ||||| || || | | || | || Sbjct 64255 GACAAGGTTCTCATTGACAATTCCGTCTGAAGCAGCAAAGAAGGCGAGGACGTGGCTGAT 64196 Query 93535 AAAATGTTTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATC 93591 || || ||| | || || ||| |||||||||||| | || || || || || Sbjct 64195 GAAGTGGCGCTCGTTGTCGTTCAGCCGGTTATCCCAATCGTGCATGTCCTTGGACAGGTC 64136 Query 93592 GACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||| | ||||| |||||||| ||||| || |||||||| | ||| || Sbjct 64135 GATCTCTTCAGCGGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCAGAT 64082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855461097080