Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25 129 5e-25 seq119 125 6e-24 seq4 118 9e-22 seq32 113 4e-20 seq142 100 2e-16 >seq25 Length=137175 Score = 129 bits (142), Expect = 5e-25 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| |||| || || ||||| || |||| ||| | ||| | |||| Sbjct 84226 ACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGACAACGTCAAGACC 84167 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || || ||||||||||| || || |||||||| Sbjct 84166 AAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGATCTTCGCCGGCAAG 84107 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||| || |||||||||||||||| || || || |||||| Sbjct 84106 CAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAGGAGTCCACC 84053 >seq119 Length=54761 Score = 125 bits (138), Expect = 6e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 22230 TGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGA 22289 |||||| || || ||||| || || ||||||| || || || || |||| ||| | || Sbjct 54563 TGTTAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCCGACACCATTGA 54622 Query 22290 CGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTAT 22349 | || |||| || ||||| ||||||||||| ||||| || || |||||||| || || Sbjct 54623 CAATGTCAAGACCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGCCTGAT 54682 Query 22350 ATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 || |||||||| ||| | || || |||||| | ||||| |||||||| || || || Sbjct 54683 TTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGA 54742 Query 22410 ATCCACC 22416 |||||| Sbjct 54743 GTCCACC 54749 >seq4 Length=308026 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| || |||| || || ||||| || || Sbjct 60335 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCC 60394 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| ||||| || || ||| Sbjct 60395 GACACCATCGACAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 60454 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| ||| || | || || |||||| Sbjct 60455 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTTTCGGACTACAAC 60514 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 60515 ATCCAGAAGGAGTCCACC 60532 >seq32 Length=118755 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || | || || || || ||| | || Sbjct 111472 ATGCAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTCC 111413 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || |||||||||||||||||||| || || ||| Sbjct 111412 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCAA 111353 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||| | ||| |||||| Sbjct 111352 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACAAC 111293 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 111292 ATCCAGAAGGAGTCCAC 111276 >seq142 Length=44629 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || ||||| || || | Sbjct 44496 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCG 44437 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| || || ||| Sbjct 44436 GACACTATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAA 44377 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | || || |||||| ||||||| ||||| Sbjct 44376 CAGCGCCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGCACTCTCTCCGACTACAAT 44317 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||| | ||| | || | || |||||| Sbjct 44316 ATTCAGAAGGAGTCGACTCTGCATCTTGTTCTCAGACTTCGTGGAGGT 44269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724076461355