Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq418 102 2e-16 seq35 84.2 4e-11 >seq418 Length=5304 Score = 102 bits (112), Expect = 2e-16 Identities = 362/553 (65%), Gaps = 22/553 (4%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| | ||||| ||||| || || | ||||||||||| ||| Sbjct 3180 GGTGAGGATCTCTGCAACTGTCAATTCTCCCTCGCCTACGGCGCCAAGATTCTGCTCAAC 3121 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || ||| | |||||||||| |||| || |||||| || | || || | Sbjct 3120 ACCGCCACTCTCCGCCTCAAGCGTGGTCACCGTTACGGTCTCTGTGGACGAAACGGTTCC 3061 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||||||||| ||||| ||| | || || || || | Sbjct 3060 GGAAAGTCTACTCTCATGCGCGCCATCCAGAACGGCCAGGTCGAGGGCTTCCCCTCTCCC 3001 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACT 279584 ||||| | || ||| || ||||||||| ||||| || || | | Sbjct 3000 GAGGAGGTCCGCACCTGGTACGTCGAGCACGACCTCGACGGTTCCGAGGGTGAGATTTCC 2941 Query 279585 GTGTTCGACTTCCTAACGTCT--GACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAA 279642 | ||||||| || | ||| ||||| | | | | | | | | | |||| Sbjct 2940 ATCATCGACTT--TATCCTCTCCGACAAGCGTCTCA--GCATTACCCGCGAC-GAGG--- 2889 Query 279643 TCATCCAGAA-ACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAA--TCT-GCCAGTA 279698 | |||| | |||| | | | ||||| || || ||| ||| | ||| ||| | Sbjct 2888 -CTGCCAGCACACTGAATGAGATGGGTTTCGACGA--GAA-GCGCCAGGTCTCGCCGATT 2833 Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 | |||||||| ||||| |||||||||||||| |||||| | || ||| | || | Sbjct 2832 GCCTCTCTGTCCGGTGGCTGGAAGATGAAGCTCGCCCTCGCGCGTGCCGTGCTGTTCAAG 2773 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || ||||| || ||||| || |||||| ||||| | |||| | |||||| Sbjct 2772 GCCGACATTCTCCTGCTCGACGAGCCCACTAACCACTTGGACGTCGTCAACATTGCCTGG 2713 Query 279819 CTAGTGTCCTACCTAACCA--GTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 | |||||| |||| |||| | || || || |||||||||| ||||||| Sbjct 2712 ATCACCAACTACCTGACCAACGTCTCCGG--TGCCACTGCCATCATTGTCTCGCACGACT 2655 Query 279877 CTGGCTTCCTAGA 279889 || ||||| || Sbjct 2654 CTCAGTTCCTCGA 2642 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| || |||| ||||| || | |||| || || ||| || || ||||| Sbjct 2349 GGTCCCAACGGATCGGGCAAGTCGACTTTGGTCAAGCTCATGGTTGGTGACACTGAGGCC 2290 Query 280239 A---CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | ||| | | || |||||||| |||||| || || | |||||| || |||||| Sbjct 2289 AAGTCTGGTGAG---GTCTGGAAGCACCCCAACTTGGTCATCGGTTACGTTGCCCAGCAC 2233 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| | || ||||||| |||||| | | ||||| | |||||| Sbjct 2232 GCTTTCCACCACATCGACCAACATCTGGACAAGACTCCCCTCGACTACATGCTGTGGCGA 2173 Query 280356 TA 280357 || Sbjct 2172 TA 2171 >seq35 Length=115666 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 251566 AAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCA 251625 ||||| || | ||| || | |||||| || |||||| |||||||||||||| || ||| Sbjct 64982 AAGAAGTTCGTCTTCCCTTGCAGAGAAATGTTCTCCATAAAGTCGAAGGGGTTCGTCGCA 64923 Query 251626 TTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATAC 251685 ||||| ||||| | ||||| | || | | ||||| || |||||||| | ||| Sbjct 64922 TTGTAGTGCTTCTCGTTACCAAGCGAAACCAGTAGACGGTCGGCAACAAACTCGATGTAC 64863 Query 251686 TGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 || |||||| | ||||||||| |||| Sbjct 64862 TGAGTCATCAGCCGGGCGTTCATGCCGATCA 64832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826699255047