Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 176 8e-39 seq142 170 4e-37 seq25 168 1e-36 seq32 149 1e-30 seq418 104 4e-17 seq23 91.5 3e-13 >seq4 Length=308026 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || || || Sbjct 60561 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 60502 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | |||||||| || ||| Sbjct 60501 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGA 60442 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 60441 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACC 60382 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 60381 TCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 60335 >seq142 Length=44629 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | | || | || || || ||||| || || || || || |||||| Sbjct 44270 CCTCCACGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAG 44329 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| ||||| | |||||||| || ||| Sbjct 44330 AGAGTGCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGA 44389 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || ||| Sbjct 44390 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGACT 44449 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||||||||| |||||||| Sbjct 44450 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 >seq25 Length=137175 Score = 168 bits (186), Expect = 1e-36 Identities = 153/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| ||||||||||| || | || || || | ||| Sbjct 84047 GTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTG 84106 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || || | ||||||||| || |||||||| ||||||||||| ||||| Sbjct 84107 CTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 84166 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||||||| || |||||||| | || || || || | |||||| || || || || Sbjct 84167 GGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 84226 Query 68438 GAGGGTCTTGACG 68450 ||||||||||||| Sbjct 84227 GAGGGTCTTGACG 84239 >seq32 Length=118755 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || ||| Sbjct 111246 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 111305 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | |||||||| || ||| Sbjct 111306 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 111365 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| | |||||| ||||||||||| | ||||| || Sbjct 111366 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACC 111425 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||| ||||| ||||| || ||||| Sbjct 111426 TCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTTACGAAGATTTGCAT 111472 >seq418 Length=5304 Score = 104 bits (114), Expect = 4e-17 Identities = 379/581 (65%), Gaps = 38/581 (7%) Strand=Plus/Plus Query 225432 CCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGG-------AC--G 225482 ||| ||| || ||| ||||| ||||||||| || |||||||||| || | Sbjct 2628 CCGTGCAGACATTGTCGAGGAACTGAGAGTCGTGCGAGACAATGATGGCAGTGGCACCGG 2687 Query 225483 ACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGT 225542 | ||||| |||||| ||| ||||| ||| || | |||| |||||||| || Sbjct 2688 AGACGTTGGTCAGGTAGTTG------GTGAT---CCAGGCAATGTTGACGACGTCCAAGT 2738 Query 225543 GGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAG 225602 |||| || || ||||| || || || ||||| || | | || | ||| |||| ||| | Sbjct 2739 GGTTAGTGGGCTCGTCGAGCAGGAGAATGTCGGCCTTGAACAGCACGGCACGCGCGAGGG 2798 Query 225603 ACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTG---AAACAGAGTGCTTAGCTT 225659 |||||||| |||||||| |||||||| ||| | || | | || | |||| | | Sbjct 2799 CGAGCTTCATCTTCCAGCCACCGGACAGAGAGGCAATCGGCGAGACCTGGCGCTTCTCGT 2858 Query 225660 CGTCAAAGCCGTACTCCAGGAGCGT-CTGGATAATGCGCTCGGGAGAGCTGC-GAGCGGC 225717 || ||| || | ||| || || |||| || ||| | | ||| ||| || Sbjct 2859 CG--AAACCCAT-CTCATTCAGTGTGCTGGCAGCCTCG-TCGCGGGTAATGCTGAGACGC 2914 Query 225718 AACGTTGGGGTCGGACGAGAGGTAA--TCATATACGGTCATGTCCGAGACAGACGCGTCA 225775 ||| ||||| ||| | ||| || | || || || | || |||| Sbjct 2915 ----TTG---TCGGA-GAG-GATAAAGTCGATGATGGAAATCTCACCCTCGGAACCGTCG 2965 Query 225776 ATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGG 225835 | |||||| || |||||| || |||| || | | |||||||||||| | |||| Sbjct 2966 AGGTCGTGCTCGACGTACCAGGTGCGGACCTCCTCGGGAGAGGGGAAGCCCTCGACCTGG 3025 Query 225836 CCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCG 225895 || || || || || | || ||| ||| || | ||||| | || ||| ||| Sbjct 3026 CCGTTCTGGATGGCGCGCATGAGAGTAGACTTTCCGGAACCGTTTCGTCCACAGAGACCG 3085 Query 225896 TAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAG 225955 ||| | | || ||||||| | ||| | || ||| || || |||||| | || ||| Sbjct 3086 TAACGGTGACCACGCTTGAGGCGGAGAGTGGCGGTGTTGAGCAGAATCTTGGCGCCGTAG 3145 Query 225956 GCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 || |||||||| | || | ||| || |||||||||||||| Sbjct 3146 GCGAGGGAGAATTGACAGTTGCAGAGATCCTCACCCTCCTC 3186 >seq23 Length=147171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 257/385 (67%), Gaps = 16/385 (4%) Strand=Plus/Minus Query 30795 ATGGCGTTTGCAGCAGGCTTGCTTCTGCAGTAATACATAAGCGTCTTGAGACCCTTCTTC 30854 ||||| || || ||||| | ||| | ||| || | |||||| |||||||||||| Sbjct 140784 ATGGCATTGGCGGCAGGACGGGTTCGGAGGTAGTATGTTCCCGTCTTCAGACCCTTCTTC 140725 Query 30855 CATGCATAGAACAGCATGGAAGACA-TTGACTTCATAG-AGGGCG-CTGCAACGAAGAGG 30911 || | ||||| ||||| | || ||||| || || ||| | |||| | | || | Sbjct 140724 CAGCCGTAGAAGTGCATGCTCGTCAGTTGAC--CAAAGCTGGGTGCCTGC-AGGTGGATG 140668 Query 30912 TTCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTC 30971 |||| || || | ||| | |||| || ||||| || || | ||| |||| | | Sbjct 140667 TTCAGACTTTGCGATTGGCAGATGAACGCTCCTCGGTCGGCGGCCATGTCTATGATGACC 140608 Query 30972 TTCATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGA---GCTCAGGGTGGATGCCA 31028 || || | |||||| | |||||||||| ||||||| | |||| | ||||| Sbjct 140607 TTTTGCGAGATCTCCCAGACCGTCTTGTAGAGAGCCTTGATGCGGTCAG---GAATGCC- 140552 Query 31029 ATGACACG--TTGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACC 31086 | |||| ||| || || || |||| |||||| || |||||||||| |||| || Sbjct 140551 -GGGCACGTTTTGAATCGAGCCACCGTGGGCAATGATACGGTTCTTCATCTGCTCGTTCC 140493 Query 31087 ACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAG 31146 || || | | | ||| || |||| ||| | |||||| || ||||||| || | Sbjct 140492 ACAGACCTTGCTCCACGAGCTCACGCAGGAGCCAAGGGTTGACGACTTGGAACTCGCCGG 140433 Query 31147 CAAGGGTCCGGCGGCTGTACAGATT 31171 | ||| |||||| |||| || || Sbjct 140432 CCAGGACTCGGCGGGTGTAAAGGTT 140408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613563945240