Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq142 127 2e-24 seq32 120 3e-22 seq4 100 2e-16 seq119 93.3 4e-14 seq25 91.5 1e-13 >seq142 Length=44629 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||| | ||| | ||| | || || || || ||||| ||||| ||| Sbjct 44269 ACCTCCACGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGA 44328 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||||| || || || ||| ||||||| ||||||||||||||||| Sbjct 44329 GAGAGTGCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGG 44388 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | || | ||||| | ||| ||||| Sbjct 44389 AATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGAC 44448 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||||||||| || || || || |||||||| Sbjct 44449 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| | ||| | || | || || || || || |||||||| || Sbjct 44495 ATACCACCACGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 44554 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||| || || || || ||| ||||||| ||||||||||||||| Sbjct 44555 GACAGAGTTCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGA 44614 Query 114273 GGAATGCCTTCTTTG 114287 |||||||| || ||| Sbjct 44615 GGAATGCCCTCCTTG 44629 >seq32 Length=118755 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| ||| ||| || || || || || || Sbjct 111276 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 111335 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || |||||||||||||| ||||| || || ||||| ||||| || Sbjct 111336 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTG 111395 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| |||||||| || | ||| | || |||||||| ||||| Sbjct 111396 ACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTC 111455 Query 114366 TTTACAAAAATCTGCATGG 114384 ||||| || || ||||||| Sbjct 111456 TTTACGAAGATTTGCATGG 111474 >seq4 Length=308026 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | |||||| ||| || || || || || Sbjct 60531 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCCTCGAGCTGCTTGCCG 60472 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||||||||||||||||||||| || ||||| ||||| || Sbjct 60471 GCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 60412 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||| || || || | ||| | || || || || || || Sbjct 60411 ACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGTGAGGGTC 60352 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 60351 TTGACGAAAATCTGCATG 60334 >seq119 Length=54761 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| || |||||||| || || || Sbjct 54748 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCAAGCTGCTTGCCG 54689 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || || |||||||||||||||||||| || ||||| |||||| || Sbjct 54688 GCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGTCTTG 54629 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| ||| || || || | || | || |||||||||| || Sbjct 54628 ACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTC 54569 Query 114366 TTTACA 114371 || ||| Sbjct 54568 TTAACA 54563 >seq25 Length=137175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| | || || || || || || || || Sbjct 84054 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGCTTGCCG 84113 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| ||||| |||||||||||||||||||| || ||||| ||||| || Sbjct 84114 GCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTG 84173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| ||| || || || | ||| | ||| || ||||| || || Sbjct 84174 ACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTC 84233 Query 114366 TTTAC 114370 || || Sbjct 84234 TTGAC 84238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420130472662404