Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 466 3e-126 seq35 217 3e-51 >seq23 Length=147171 Score = 466 bits (516), Expect = 3e-126 Identities = 1137/1707 (67%), Gaps = 53/1707 (3%) Strand=Plus/Minus Query 243911 CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATG 243970 || || ||||||||| |||| | |||| || || ||||| | |||||||||||| Sbjct 140634 CGGTCGGCGGCCATGTCTATGATGACCTTTTGCGAGATCTCCCAGACCGTCTTGTAGAGA 140575 Query 243971 GGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGC 244030 | ||||| | | || || | || | ||| || | |||||| |||| | |||| Sbjct 140574 GCCTTGATGCGGTCAGGAATGCCGGGCACGTTTTGAATCGAGCCACCGTGGGCAATGATA 140515 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT- 244089 || | ||| | ||||||||||| || |||||| ||| |||| ||| Sbjct 140514 CGGTTCTTCATCTGCTCGTTCCACAGACCTT---GCTCCACGAGCTCACGCAGGAGCCAA 140458 Query 244090 --GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| || || || ||||| || | ||| || ||||| ||| ||||||||| || Sbjct 140457 GGGTTGACGACTTGGAACTCGCCGGCCAGGACTCGGCGGGTGTAAAGGTTGCTGGTGTAA 140398 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||| || ||| || ||| || ||||| | || |||||||||||||| | Sbjct 140397 GGCTCGAAGCACTCGTTGAAGCCAAGAATCTGAGAGGTCGAGGCAGTCGGCATGGGTGCG 140338 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 | || || ||| | | |||||| | ||| | |||||||| ||||||| Sbjct 140337 AGGAGGAGCGAGTTGCGGAGGCCGTGGGTGGCGATCTTCTGCTTGAGCTCGGCCCAGTCC 140278 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | || | || | || | | |||||| | ||| | || ||| |||||| Sbjct 140277 CAGAGGC--------TGCTGG-GTGTAACGCCCCAAAAGTCGTATTGGAGCTCGCCCTTG 140227 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCT 244386 ||| | |||||||| |||| ||| ||||| || || | | || | || || | Sbjct 140226 CTGGCAGGGCTGCCGGCGTATGTCTCGTAGGTGCCCA-GCTCAGCAGCAATCTCGCA-CG 140169 Query 244387 CTCG-TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 || ||||| ||||||| |||||| ||||| ||||| |||| | | ||||| Sbjct 140168 AGCGCTCGAGAGCGGCGTGGTAGATAGTCTCAAAGATTTGAATGTTAAGCTTCTTGGCCT 140109 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | || | ||| | ||||| ||||||||| | ||||| || || | || |||| Sbjct 140108 CGGGGCTGTCGAAAGCATATCCCATGATCATGAAGGCATCGGCGAGACCGTTGACACCGA 140049 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | || ||||| | ||| || |||||| | | || ||||| |||||||| ||||| Sbjct 140048 TACCAATGGGACGGTGGCGGAAGTTGGACTTCTTAGCCTCGGGAACGGGGTAGTAGTTGA 139989 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 |||||| | |||||| | ||||| | || | | ||| || ||| || | Sbjct 139988 TGTCGATGATCTTGTTCAAGTTGCCGCAGACAACCTTGGTGACCTCATGGAGCTTCTTGA 139929 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC----ACAAACTCGTTGAGGGCG 244681 ||||||| || || | | | |||| || | | | | |||||| Sbjct 139928 AGTCGTAT--GTGCGGGTGTTGGTT--TGGTTGTCGTAGTTGATGTAGGAGGGGAGGGCC 139873 Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 | ||| |||| ||||||||| || ||||| || | |||| | || ||||| ||| Sbjct 139872 ATGCTAGCCAAGTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATCTCAGTG 139813 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || | ||| |||||||||||| || |||| || || ||||||||| |||| ||| Sbjct 139812 CACAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCG 139753 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 |||||||||||||||||||| || |||||| |||||| |||||| | || |||| Sbjct 139752 TCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAG 139693 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 || | |||||||| || | || |||||||| || |||||| ||| ||| Sbjct 139692 AGCTTTTGAGCCTTGATGGTGCGACGGGCCTTGCCTTCCTTCTCGTACTTCTCGTAGAGG 139633 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 ||||||||||| ||| | || ||| | || ||||||||| |||||||| ||| Sbjct 139632 GCCTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATCAGA 139573 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||||||||| | | ||| |||| |||||| | |||||| |||||||| || | | Sbjct 139572 GACCACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGCGTAG 139513 Query 245042 AAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||||| || | | ||| | ||| ||| ||| |||||| | || || | || | Sbjct 139512 AAGAGCTCTCGAG--CTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 139455 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 | |||||||| |||||||||||| | ||||| || | ||||||||| |||||||||| Sbjct 139454 CGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCCGGGACGCTTGTTGC 139395 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | || ||||| | | | ||||||| |||| ||| ||||| | ||||| || Sbjct 139394 CACCTTGGTCGA----CGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATC 139339 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| ||| ||||||||||||| |||||||| ||| |||| | || | | ||| Sbjct 139338 CCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCCAGTGCCACGGATGCAGTGAATG 139279 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 | || | || ||||| |||| || | ||||||| |||||| |||||| Sbjct 139278 TTGAGACCAATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTCGTAG 139219 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || || || ||| ||| ||||||| ||| ||| ||||| || |||||||| || ||| Sbjct 139218 ATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTG 139159 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAA 245454 || ||| | |||||| |||||||| ||| || || ||||| | || ||| | | Sbjct 139158 GGTGTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAAGTA-CTTCTCCGACATCAG 139100 Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCAT 245514 ||| |||| || ||||||||||| ||||||||| | |||| | ||| Sbjct 139099 GTTGTATGTCTCGATGGCAGCGTCGATGTCTCGGCCGTGGATACCGACGGCGACACGCAT 139040 Query 245515 GAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTG------AGCATGTAGGA 245568 || |||| || ||| ||| | ||| | || ||| |||| ||| || Sbjct 139039 CAGCATGTGTTGCGGCCGCTC---AGCAACCTTG---CCATTGATGCGCAGCAGGTATGA 138986 Query 245569 GCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | ||||| |||||||| |||||||| Sbjct 138985 TCTTTCGAGAGTCTTGAAGCCAAAGTA 138959 >seq35 Length=115666 Score = 217 bits (240), Expect = 3e-51 Identities = 365/518 (70%), Gaps = 15/518 (3%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||| | ||||| ||||| || ||| | ||||| | || || || ||||| || Sbjct 64474 CTGTTCGACGCCATCGAGACCATTCCCGTCGTCAAGCAAAAAGCCGAGTGGGCTATCCGA 64533 Query 42669 TGGATCGAGAGTC-CCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| || | | || | | || || | ||| | ||| | |||||| | |||||||| Sbjct 64534 TGGATC-AGCGACACCCAGTCGACATTTGCTGAGCGCCTGATTGCCTTTGCTGCCGTCGA 64592 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGA 42786 ||||||||||||||| ||| | || || |||||||| ||||| ||| || ||| | || Sbjct 64593 GGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGCTGAAGAAGCGCGGTCT-GA 64651 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 ||||||| || ||||||||||| || || || ||| | ||||| || ||||| | |||| Sbjct 64652 TGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACGAAGGCCTGCACACCGACT 64711 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAA---GGAGCGGGTCC 42903 |||||||||| |||||| ||||||||| | |||| | | | ||| || | Sbjct 64712 TTGCCTGCCTGCTGTTC---GGCCACCTCA---AGAAGCGCCCACATCCCGAGACTGTGC 64765 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | ||||| | ||||| ||| || || | | ||||| || | | ||||| | Sbjct 64766 TGAGAATCATTAGCGAGGCGGTGACCATTGAACAAGCTTTCCTGACCGATGCTCTGCCAG 64825 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | || ||| ||||||||||| | || ||| |||||||| ||| || ||||||| Sbjct 64826 TATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTACATCGAGTTTGTTGCCGACC 64885 Query 43024 ATCTCCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 ||| ||| | | ||| | || | | |||||| || || ||||||||||||| Sbjct 64886 GTCTACTGGTTTCGCTTGGTAACGAGAAG-CACTACAATGCGACGAACCCCTTCGACTTT 64944 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTT 43120 ||||||||||| || || | || ||||| ||||| || Sbjct 64945 ATGGAGAACATTTCTCTGCAAGGGAAGACGAACTTCTT 64982 Score = 102 bits (112), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || ||||||||| || ||||| |||||| Sbjct 64082 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACCGCTGAAGAGATCGACCTG 64141 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCT----GAGAACGAAAAGTTTTTCCTCAA 42415 ||||||||| | || ||||| | || | || || ||||| ||| ||| Sbjct 64142 TCCAAGGACATGCACGATTGGGA-TAACCGGCTGAACGACAACGAGCGCCACTTCATCAG 64200 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || |||||||| || || || ||||| || |||||||||||||| | | | Sbjct 64201 CCACGTCCTCGCCTTCTTTGCTGCTTCAGACGGAATTGTCAATGAGAACCTTGTCGAGCG 64260 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 |||| ||||| || |||||| || |||||||||||||||||||| Sbjct 64261 ATTCAGTTCCGAGGTACAAGCAGCTGAGGCCCGATGCTTCTACGGCTTCCAGAT 64314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330146147920