Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq32 127 2e-24 seq35 125 7e-24 seq4 122 9e-23 seq25 96.9 3e-15 seq142 91.5 1e-13 seq119 86.0 6e-12 >seq32 Length=118755 Score = 127 bits (140), Expect = 2e-24 Identities = 148/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||| || ||||||||| || || |||| Sbjct 111279 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 111338 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| || |||||||||||||| || ||||| || ||||| ||| || | || | Sbjct 111339 AAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACA 111398 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || || ||||||| || | || || || || ||||| || Sbjct 111399 TTG-TCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTCTT 111457 Query 138600 TACAAAAATCTGCATGG 138616 ||| || || ||||||| Sbjct 111458 TACGAAGATTTGCATGG 111474 >seq35 Length=115666 Score = 125 bits (138), Expect = 7e-24 Identities = 322/490 (66%), Gaps = 28/490 (6%) Strand=Plus/Plus Query 52339 GCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCG 52395 |||||||| | ||||||| || |||||| ||||||||| | || | || | Sbjct 64509 GCAAAAAGCCG-AGTGGGCTATCCGATGGATC---AGCGACACCCAGTCGACATTTGCTG 64564 Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 ||||| || | ||||| || ||||||||| | || || || ||| ||||| ||| Sbjct 64565 AGCGCCTGATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCA 64624 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 |||||| | || | | || | |||||||||||||| ||| || ||| |||| Sbjct 64625 TCTTTTGGCTGAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTA 64684 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---------CTACTACAAGACGC 52566 || |||||||| |||||||| |||||||| ||||| | || ||||| || Sbjct 64685 GCCGAGACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCGGCCACCTCAAGAAGC 64744 Query 52567 GCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTA 52626 || || || | || || | ||||| || | | ||||||||| | | Sbjct 64745 GC----CC--------ACATCCCGAGACTGTGCTGAGAATCATTAGCGAGGCGGTGACCA 64792 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | ||| | | || | || | || ||||| || ||| | ||||||||||| | | Sbjct 64793 TTGAACAAGCTTTCCTGACCGATGCTCTGCCAGTATCACTGATCGGCATGAACGCCCGGC 64852 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAA 52746 ||| |||||||||||||||| || || ||||| |||| ||| || | | Sbjct 64853 TGATGACTCAGTACATCGAGTTTGTTGCCGACCGTCTACTGGTTTCGCTTGGTAACGAGA 64912 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 || ||| ||| || || || || || |||||| | |||||||| || | || |||| Sbjct 64913 AGCACTACAATGCGACGAACCCCTTCGACTTTATGGAGAACATTTCTCTGCAAGGGAAGA 64972 Query 52807 CCAACTTTTT 52816 | ||||| || Sbjct 64973 CGAACTTCTT 64982 >seq4 Length=308026 Score = 122 bits (134), Expect = 9e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| |||||||| || || |||| Sbjct 60528 GACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCG 60469 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||||||||||||||| || || || ||||| ||| || || | | Sbjct 60468 AAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACA 60409 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||||| || | || ||||| || || || || Sbjct 60408 TTGT-CGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTT 60350 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 60349 GACGAAAATCTGCATG 60334 >seq25 Length=137175 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| | || || ||||||||| || || |||| Sbjct 84057 GACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCG 84116 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| |||||||||||||| || || || ||||| || | || || || | Sbjct 84117 AAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTC-TTGGATCTTGGTCTTGAC 84175 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| ||||||||||||| || | ||| || || || || || | Sbjct 84176 GTTG-TCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCT 84234 Query 138599 TTAC 138602 | || Sbjct 84235 TGAC 84238 >seq142 Length=44629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||||||| | ||| || ||| || || || || |||| Sbjct 44303 GACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAAGCTGCTTTCCGGCG 44362 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||||||||||||||| || || || ||||| || | || || || | Sbjct 44363 AAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTC-CTGGATCTTGGTCTTGAC 44421 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||||| || |||| || | || || || ||||| || | Sbjct 44422 GTTG-TCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCT 44480 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 44481 TGACGAAGATCTGCAT 44496 >seq119 Length=54761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||| || || || || |||| Sbjct 54745 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCG 54686 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || || || |||||||||||||| || || || ||||| ||| | || || || Sbjct 54685 AAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGTCTTGAC 54627 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||| ||||||| || | || || || |||| || | Sbjct 54626 ATTG-TCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCT 54568 Query 138599 TTACA 138603 | ||| Sbjct 54567 TAACA 54563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257642084240