Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq142 129 6e-25 seq32 116 4e-21 seq35 104 2e-17 seq4 96.9 3e-15 seq25 86.0 6e-12 >seq142 Length=44629 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| ||| | ||||| || || ||||| ||||| Sbjct 44300 GTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAAGCTGCTTTCCG 44359 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||| || || ||||| ||||||||||||||| ||| || |||| Sbjct 44360 GCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 44419 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| ||||||||||| ||| | || ||||||||||| || Sbjct 44420 ACGTTG-TCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGT 44478 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 44479 CTTGACGAAGATCTGCAT 44496 >seq32 Length=118755 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || |||||| || || ||||| || || Sbjct 111276 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCG 111335 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || || || || || ||||||||||| ||| || |||| Sbjct 111336 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTG 111395 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||||| |||| ||| | || |||||||| ||||| Sbjct 111396 ACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTC 111455 Query 127097 TTTACAAAAATCTGCATGG 127115 ||||| || || ||||||| Sbjct 111456 TTTACGAAGATTTGCATGG 111474 >seq35 Length=115666 Score = 104 bits (114), Expect = 2e-17 Identities = 283/423 (67%), Gaps = 19/423 (4%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 |||| || || || |||||||||| |||||||||| ||| |||||| | || |||| Sbjct 64571 TGATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTT 64630 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 |||| | || | ||||||||||| || || || ||||| || ||| Sbjct 64631 GGCTGAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAG 64690 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACT---ACAACACTAGAGTCGATCAA 47318 ||||||||||||||||| |||||||||| || || | || | | ||| || || Sbjct 64691 ACGAAGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCGGCCACCTCAAGAAGCGCCCAC 64750 Query 47319 AAGTTGGACGTGCCCACCGT-CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGA 47377 | || | || || | | || || || ||| || || ||||||| | Sbjct 64751 A----TCCCGAG---ACTGTGCTGAGA-ATCATTAGCGAGGCGGTGACCATTGAACAAGC 64802 Query 47378 GTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAA 47437 || | |||| |||||||| | ||| | | || |||||||| | |||||| | Sbjct 64803 TTTCCTGACCGATGCTCTGCCAGTATCACTGATCGGCATGAACGCCCGGCTGATGACTCA 64862 Query 47438 GTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCA 47497 ||||||||| ||||| |||||||| || || ||| ||| ||| | ||| || | Sbjct 64863 GTACATCGAGTTTGTTGCCGACCGTCTACTGGTTTCGCT-TGGTA--ACGAGAAGCACTA 64919 Query 47498 CA--CCGA-GAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTT 47554 || ||| ||| || ||||| |||||| | |||||||| || | || ||||| ||||| Sbjct 64920 CAATGCGACGAACCCCTTCGACTTTATGGAGAACATTTCTCTGCAAGGGAAGACGAACTT 64979 Query 47555 TTT 47557 || Sbjct 64980 CTT 64982 >seq4 Length=308026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| || || || ||||| || Sbjct 60564 GCACCACCACGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 60505 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || || ||| |||||| ||||| || || ||| Sbjct 60504 GAAAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGA 60445 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | ||| Sbjct 60444 GGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCC 60385 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| | || || || || || || || || |||||||||||| Sbjct 60384 ACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 60334 >seq25 Length=137175 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||| || || || ||||| || || Sbjct 84054 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGCTTGCCG 84113 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || || || || ||||| |||||||||||||| ||| || |||| Sbjct 84114 GCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTG 84173 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | ||| || |||| ||| | ||| || ||||| || || Sbjct 84174 ACGTTG-TCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGT 84232 Query 127096 TTTTAC 127101 || || Sbjct 84233 CTTGAC 84238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496241136080