Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq32 107 2e-18 seq142 93.3 4e-14 >seq32 Length=118755 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||| ||||| || || ||||| Sbjct 111246 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 111305 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | || || || ||| | |||| || || |||||||| ||| Sbjct 111306 AGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 111365 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || ||||| || || |||| || | |||||||||||| ||||| Sbjct 111366 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACC 111425 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| || |||||||| ||||| ||||| || |||||||| Sbjct 111426 TCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTTACGAAGATTTGCAT 111472 >seq142 Length=44629 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || || | || |||||||| || || ||||| || ||||| || ||| | Sbjct 44270 CCTCCACGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAG 44329 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || ||||| ||| | || | || || |||||||| ||| Sbjct 44330 AGAGTGCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGA 44389 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||| || |||||||| Sbjct 44390 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTTGTCGATAGTGTCCGAGGACTCGAC 44448 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | || |||||||| || || || || || || ||||| Sbjct 44449 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998866419320