Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq23 161 1e-34 seq35 105 8e-18 >seq23 Length=147171 Score = 161 bits (178), Expect = 1e-34 Identities = 1120/1768 (63%), Gaps = 77/1768 (4%) Strand=Plus/Minus Query 115557 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGA 115616 |||||||||||| | |||||||| || |||| ||||||| | || | ||||| | Sbjct 140761 TCGGAGGTAGTATGTTCCCGTCTTCAGACCCTTCTTCCAGCCGTAGAAGTGCATGCTCGT 140702 Query 115617 CAACTTGGAGAGTGTTGGACTT-TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 || ||| | | ||| | || | || ||||| |||||| ||||| ||||| Sbjct 140701 CAG-TTGACCAAAGCTGGGTGCCTGCAGGTGGATGTTCAGACTTTGCGATTGGCAGATGA 140643 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 | ||| || || || ||||| || || | |||| | ||| ||||| || || Sbjct 140642 ACGCTCCTCGGTCGGCGGCCATGTCTATGATGACCTTTTGCGAGATCTCCCAGACCGTCT 140583 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATC---CACGATATTTTGGATAGAGCCACCTG 115792 ||||||| ||| || || || || | |||| ||||| || |||||||| Sbjct 140582 TGTAGAGAGCCTTGATGCGGTCAGGAATGCCGGGCACG---TTTTGAATCGAGCCACCG- 140527 Query 115793 CCTTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT 115849 | | | |||| | | |||||| | || ||| ||||| || | ||| || Sbjct 140526 --TGGGCAATGATACGGTTCTTCATCTGCTCGTTCCACAGACCTTGCTCCACGAGCTC-- 140471 Query 115850 CCACG-AGGTGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 115905 ||| ||| || | ||||| || ||||| || || ||| || | || Sbjct 140470 --ACGCAGGAGCCAAGGGTTGACGACTTGGAACTCGCCGGCCAGGACTCGGCGGGTGTAA 140413 Query 115906 ATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATT-TGGGCTGTGGAGGC 115964 | |||| | ||||| ||||| |||||||| ||| | |||||| | || | || ||||| Sbjct 140412 AGGTTGCTGGTGTAAGGCTCGAAGCACTCGTTGA-AGCCAAGAATCTGAGAGGTCGAGGC 140354 Query 115965 TGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTT 116024 || ||||||||||| | ||| || ||||||||| || || | ||| Sbjct 140353 AGTCGGCATGGGTGCGAGGAGGAGCGAGTTGCGGAGGCCGTGGGTGGCGATCTTCTGCTT 140294 Query 116025 GAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 ||| || ||||||| || | ||| || | | | |||| | || | ||||| Sbjct 140293 GAGCTCGGCCCAGTCCCAGAGGCTGCTGGGTGTAACGC-CCCAAAAGTCGTATTGGAGCT 140235 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 116141 || | | || || || | ||||||| || | |||| | ||| || ||| Sbjct 140234 CGCCCTTGCTGGCAGGGCTGCCGGCGTATGTCTCGTAGGTGCCC---AGCTCAGCAGCAA 140178 Query 116142 T-TCGGAGCTCGC-CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | ||| | | || |||||| || ||||| || || |||||||| || || || | Sbjct 140177 TCTCGCA-CGAGCGCTCGAGAGCGGCGTGGTAGATAGTCTCAAAGATTTGAATGTTAAGC 140119 Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACC 116258 |||||||||| | || || || | | || | || || |||| |||||||| Sbjct 140118 TTCTTGGCCTCGGGGCTGTCGAAAGC-ATATCCCATGATCATGAAGGCATCGGCGAGACC 140060 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---AC 116315 | |||||||| ||||| || || || | | || ||||| ||| ||| || Sbjct 140059 GTTGACACCGATACCAATGGGACGGTGGCGGAAGTTGGACTTCTTAGC---CTCGGGAAC 140003 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||| || | || | ||||| | | | || | || | ||||||||| |||| || Sbjct 140002 GGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTGCCGCAGACAACCTTGGTGACCTC 139943 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC---TTCATTGACATACTT-----AGGA 116427 ||| ||||| | | | || | |||| || | || ||| | || || |||| Sbjct 139942 ATGGAGCTTCTTGAAGTCGTATGTGCGGGTGTTGGTTTGGTTGTCGTAGTTGATGTAGGA 139883 Query 116428 ----AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 116483 ||||| || |||| || || |||| | |||||| | || |||| || || Sbjct 139882 GGGGAGGGCCATGCTAGCCAAGTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGAT 139823 Query 116484 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 116543 || || || ||||| || || | ||| ||||| || | |||||| || || ||||| Sbjct 139822 GATCTCAGTGCACAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCG 139763 Query 116544 GTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 116603 ||| || |||||||||||||| | || | || ||||| || |||| || ||| || Sbjct 139762 GTTGGCAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGAT 139703 Query 116604 AGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG--CTCGCCCCTCCTCCTCGTA 116660 || | ||| | | | | | || | | ||| || || || ||| |||| |||||| Sbjct 139702 GGCGTACCAGAGCTTTTGAGCCTTG-ATGGTG-CGACGGGCCTTGCCT-TCCTTCTCGTA 139646 Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTAT 116719 ||| |||||||||||| ||||| || || ||| | || | ||| || || || | Sbjct 139645 CTTCTCGTAGAGGGCCTCGAACTCCTCGCCGTACA-CGTCGGCGAGACCGGGGCACTCGT 139587 Query 116720 CTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 116779 || || | |||||||| | || || || || | ||||||||| | ||| || | Sbjct 139586 TGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGAA 139527 Query 116780 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 116839 ||||||| || ||||||| || ||| || | || || | || || || || | Sbjct 139526 TCCAGAGAGCGTAGAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 139467 Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 116899 || | || || | || || | |||||| || || | ||| | || | | || Sbjct 139466 GGTCGAGGAACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCC-- 139409 Query 116900 TGCGACGA------CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953 | |||| ||| | |||| || || | || || ||| | || || |||| Sbjct 139408 -GGGACGCTTGTTGCCACCTTGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCA 139350 Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTGTTGGCTCT 117011 | || | || || | || ||| || || ||| ||| || ||| | || | | Sbjct 139349 TGGGCACAATCCCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCCAG--TGCCACG 139292 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || ||| |||| | ||||||||| || || ||| || ||||| | | Sbjct 139291 GATGCAGTGAATGTTGAGACCAATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTT 139232 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 ||| || ||||||| || ||||| ||||| |||| | | || |||||||| || Sbjct 139231 GAGGGTGTCGTAGATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAGA 139172 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191 || || || | ||||| || ||||||||||| || || | || || |||| ||| Sbjct 139171 CAGCTGAGGGTTGGGTGTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAA-GTACT 139113 Query 117192 T-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGA 117250 | | |||||| | ||| ||||| | | ||| | |||||| ||||| ||||||| Sbjct 139112 TCTCCGACATCAGGTTGTATGTCTCGATGGCAGCGTCGATGTCTCGGCCGTGGATACCGA 139053 Query 117251 TTGAGACCCGCATAAACATGTATTGGGG 117278 | ||| ||||| | ||||| ||| || Sbjct 139052 CGGCGACACGCATCAGCATGTGTTGCGG 139025 >seq35 Length=115666 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || || ||||| ||| || || |||||||||||| ||| || Sbjct 64715 GCAAAGTCGGTGTGCAGGCCTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCCG 64656 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||||| ||| || || | ||| ||||||||||||||||| Sbjct 64655 GGCATCAGACCGCGCTTCTTCAGCCAAAAGATGGACGCAAACGAGCCAGAGAAGAAGATG 64596 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||| || || || |||| || ||||| ||||| Sbjct 64595 CCCTCGACGGCAGCAAAGGCAATCAGGCGCTCAGCAAA 64558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501317999720