Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq23 174 2e-38 >seq23 Length=147171 Score = 174 bits (192), Expect = 2e-38 Identities = 449/679 (66%), Gaps = 10/679 (1%) Strand=Plus/Minus Query 203846 ACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTT 203905 || |||||||| ||||| || ||||||| | | ||| || ||||| | || ||||| Sbjct 140796 ACGGTGAACTGGATGGCATTGGCGGCAGGACGGGTTCGGAGGTAGTATGTTCCCGTCTTC 140737 Query 203906 AGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCC 203965 || ||||||| ||| ||||| | ||||||| | ||||| | | | |||| | | Sbjct 140736 AGACCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGTTGACCAAAGCTGGGTGCCTGC 140677 Query 203966 ATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTG 204025 | ||| ||||||||| || |||| |||||| | | || || |||||||| | Sbjct 140676 AGGTGGATGTTCAGACTTTGCGATTGGCAGATGAACGCTCCTCGGTCGGCGGCCATGTCT 140617 Query 204026 ATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGC 204085 || ||| ||| ||||| |||||||| ||||||||| | | | || || | | ||| Sbjct 140616 ATGATGACCTTTTGCGAGATCTCCCAGACCGTCTTGTAGAGAGCCTTGATGCGGTCAGGA 140557 Query 204086 ACATCTTCC---CACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTC 204141 | | || ||||| ||| ||||||| || ||| || | | || || ||| Sbjct 140556 A----TGCCGGGCACGTTTTGAATCGAGCCACCGTGGGCAATGATACGGTTCTTCATCTG 140501 Query 204142 CTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAA 204201 ||| ||||| || | | ||||| |||| || ||||||| || || || Sbjct 140500 CTCGTTCCACAGACCTTGCTCCACGAGCTCACGCAGGAGCCAAGGGTTGACGACTTGGAA 140441 Query 204202 GTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTT 204261 || |||| ||| || | |||||| | |||||| ||||| | || ||||| |||||| Sbjct 140440 CTCGCCGGCCAGGACTCGGCGGGTGTAAAGGTTGCTGGTGTAAGGCTCGAAGCACTCGTT 140381 Query 204262 GTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCG 204321 | ||| | |||||||| ||| ||| || |||||||| || ||||| || |||||||| Sbjct 140380 GAAGCCAAGAATCTGAGAGGTCGAGGCAGTCGGCATGGGTGCGAGGAGGAGCGAGTTGCG 140321 Query 204322 CACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTT 204381 | |||| | || | | |||| || || |||||| | |||||| | Sbjct 140320 GAGGCCGTGGGTGGCGATCTTCTGCTTGAGCTCGGCCCAGTCCCAGAGGCTGCTGGGTGT 140261 Query 204382 CACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGG 204441 |||||||| | |||| | || | ||| | ||| | |||||||| ||| ||| Sbjct 140260 AACGCCCCAAAAGTCGTATTGGAGCTCGCCCTTGCTGGCAGGGCTGCCGGCGTATGTCTC 140201 Query 204442 ATAAG-GCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGG 204500 || | || | | || | || | || ||||||| | | ||| | ||| || | Sbjct 140200 GTAGGTGCCCAGC-TCAGCAGCAATCTCGCACGAGCGCTCGAGAGCGGCGTGGTAGATAG 140142 Query 204501 TCTCAAAGATCTGAACGTT 204519 |||||||||| |||| ||| Sbjct 140141 TCTCAAAGATTTGAATGTT 140123 Score = 145 bits (160), Expect = 1e-29 Identities = 480/727 (66%), Gaps = 26/727 (4%) Strand=Plus/Minus Query 204889 GATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCG 204948 |||||| ||||||||||| |||||| | || | | || |||||| |||||||| Sbjct 139822 GATCTCAGTGCACAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCG 139763 Query 204949 GTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAA 205007 ||| | ||||||||| | |||||| || | || |||| |||| | ||| || | Sbjct 139762 GTTGGCAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCG-AGGA 139704 Query 205008 TGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTC-ACGTACATC-CCTTGAGACTCGTA 205065 || | ||| | | |||||| | || | | ||| | | |||| |||||| Sbjct 139703 TGGCGTACCAGAGCTTTTGAGCCTTGA--TGGTGCGACGGGCCTTGCCTTCCTTCTCGTA 139646 Query 205066 TTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTT 205125 || ||| || ||| | || || ||||||||||| || || || || | || Sbjct 139645 CTTCTCGTAGAGGGCCTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTT 139586 Query 205126 GGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGA 205184 ||| ||||||||||||||| | | || | || || |||| ||| |||| |||| | Sbjct 139585 GGGGCACATCAGAGACCACTCGCCGTTC-TGTTCGACTCTCTTCATGAACAAGTCGGGAA 139527 Query 205185 TCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCA 205244 |||| || |||| || || || || || | | | || | || ||||||| | Sbjct 139526 TCCAGAGAGCGTAGAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 139467 Query 205245 AGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCT 205303 ||| || || || | | ||| | |||||| ||||| | | | ||| | ||||| Sbjct 139466 GGTCGAGG-AACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCCG 139408 Query 205304 GGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATC 205363 || | |||||| ||||| ||||| || |||| | |||| | ||||||||||| Sbjct 139407 GGACGCTTGTTGCCACCTTGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATG 139348 Query 205364 GGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCAC- 205422 ||||| | ||||||| | ||||| |||| |||| |||| ||| | ||| Sbjct 139347 GGCACAATCCCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGC---CAGTGC-CACG 139292 Query 205423 GTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTT 205478 | || || ||| ||||| || || | | |||| ||| |||||| |||| Sbjct 139291 GATGCAGTGAATGTTGAGACCAATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTT 139232 Query 205479 GCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAG 205538 | || ||| |||||| ||| ||||||| |||||| || || ||||| ||||||||| Sbjct 139231 G-AGGGTGTCGTAGATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAG 139173 Query 205539 CCAGCTTGGCAAAGTTG---GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595 ||||| | |||| ||||| |||| |||||| ||||| ||| || ||||| Sbjct 139172 ACAGCT---GAGGGTTGGGTGTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAAGT 139116 Query 205596 GCTTCTC 205602 |||||| Sbjct 139115 ACTTCTC 139109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795147576449520