Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq142 140 8e-28 seq4 138 3e-27 seq32 129 1e-24 seq25 113 1e-19 seq119 111 4e-19 seq23 95.1 3e-14 >seq142 Length=44629 Score = 140 bits (154), Expect = 8e-28 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || |||||||||||||| |||||||| |||| ||||||||||| || ||| Sbjct 44504 CGGAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTT 44563 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||| || Sbjct 44564 CGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCC 44623 Query 199529 TC 199530 || Sbjct 44624 TC 44625 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || ||||| || |||||||||||||| || | |||||||| | | ||| Sbjct 44276 CGAAGTCTGAGAACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTG 44335 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| ||||||||||||||||||||||| ||||| ||||||||| ||| || Sbjct 44336 CGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCC 44395 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | Sbjct 44396 TCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGG 44455 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || || || Sbjct 44456 GTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTG 44493 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||||||||||||| ||||||| ||| | ||| || | || |||||| ||||| Sbjct 44598 CTCATCTTCGCCGGAAAGCAGCTGGAAGACGGACGAACTCTGTCTGACTACAACATCCAG 44539 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| ||||| ||||||||| | |||| || Sbjct 44538 AAGGAGTCCACTCTCCACCTTGTTCTCCGACTCCG 44504 >seq4 Length=308026 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||| | | ||| | ||||| Sbjct 60546 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCC 60487 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||| ||||||||| ||| || || ||| Sbjct 60486 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 60427 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 60426 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTC 60367 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || ||||| || Sbjct 60366 TTACCCGTGAGGGTCTTGACGAAAATCTG 60338 >seq32 Length=118755 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| || ||| | || || Sbjct 111261 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCC 111320 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||| |||||||| ||| || || || Sbjct 111321 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCT 111380 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||| || || | || || ||| Sbjct 111381 TGGATCTTGGTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTC 111440 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 111441 TTGCCGGTGAGAGTCTTTACGAAGATTTG 111469 >seq25 Length=137175 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| |||||| || | | || | || || Sbjct 84039 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCC 84098 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| ||||| || ||||||||| ||| || || || Sbjct 84099 TCGAGCTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCT 84158 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||||||| Sbjct 84159 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTC 84218 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 84219 TTCCCGGTGAGGGTCTTGAC 84238 >seq119 Length=54761 Score = 111 bits (122), Expect = 4e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 |||||||||||| || |||||||| |||| ||||||||| | | ||| | || ||||| Sbjct 54761 GACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTC 54702 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 |||||||| |||||||| || || || || ||||||||| ||| || || ||||| Sbjct 54701 AAGCTGCTTGCCGGCGAAAATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTG 54642 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 |||||| ||| || || | |||||| | | || || || | ||||| ||||| Sbjct 54641 AATCTTGGTCTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 54582 Query 199600 ACCCGTGAGAGTTTTCACA 199618 || || | || || ||| Sbjct 54581 GCCGGTCAAGGTCTTAACA 54563 >seq23 Length=147171 Score = 95.1 bits (104), Expect = 3e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 ||||||||||||| |||||||| | ||| ||| | || ||| | | ||| || | Sbjct 139755 GCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTAC 139696 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | ||| || || | ||| | || | ||||| || ||||| |||| ||| Sbjct 139695 CAGAGCTTTTGAGCCTTGATGGTGCGACGGGCCTTGCCTTCCTTCTCGTACTTCTCGTAG 139636 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 ||| | ||||| |||| ||||| | ||| | |||||||| || || || || | Sbjct 139635 AGGGCCTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATC 139576 Query 167948 AGACTCCAATTTCC-ATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 168006 ||| ||| | || || || ||||| ||||||||||| | ||||| | |||| | || Sbjct 139575 AGAGACCACTCGCCGTTCTGT-TCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGC 139517 Query 168007 GTAGAA 168012 |||||| Sbjct 139516 GTAGAA 139511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178910014516389