Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq142 141 1e-28 seq32 131 2e-25 seq4 131 2e-25 seq119 129 7e-25 seq25 107 2e-18 >seq142 Length=44629 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || |||||| || |||||||||||||| |||||||| |||| || Sbjct 44288 ACAAGATGCAGAGTCGACTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCA 44347 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| || | |||||| ||||| | || | || |||||||||| | Sbjct 44348 AGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 44407 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | ||||| || || || || | |||||||| || Sbjct 44408 ATCTTGGTCTTGA-CGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTT 44466 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||||| ||||| Sbjct 44467 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 44496 >seq32 Length=118755 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| |||||||| |||| |||||||||||||||||||| Sbjct 111281 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAA 111340 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||| | || | | ||||||||| |||||| |||||| | Sbjct 111341 GATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATT 111400 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||||| || || | || || || ||||| || || || || || Sbjct 111401 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTGAGAGTCTTTAC 111460 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 111461 GAAGATTTGCAT 111472 >seq4 Length=308026 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || | || |||||||||||||||||||| Sbjct 60526 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 60467 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||| | || | || |||||||||| |||||| |||||| | Sbjct 60466 GATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 60407 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | ||||| || || ||||| || || || || Sbjct 60406 GTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGAC 60347 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 60346 GAAAATCTGCAT 60335 >seq119 Length=54761 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || ||||||||||||||||| Sbjct 54743 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAA 54684 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||| || ||||| | || | || |||||||||| ||||| |||||| | Sbjct 54683 AATCAGGCGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGTCTTGACATT 54624 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||||| ||||| |||| || ||||| Sbjct 54623 GTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTAAC 54564 Query 46582 A 46582 | Sbjct 54563 A 54563 >seq25 Length=137175 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || || || |||| |||||||||||||||||||| Sbjct 84059 CTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 84118 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || || ||||| | || | || ||||||||| |||||| |||||| ||| Sbjct 84119 GATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGT 84177 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || || || || || || | Sbjct 84178 TGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGA 84237 Query 46581 C 46581 | Sbjct 84238 C 84238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232980776840