Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq35 156 4e-33 seq32 136 4e-27 seq142 132 5e-26 seq4 116 4e-21 seq25 107 2e-18 seq119 102 8e-17 >seq35 Length=115666 Score = 156 bits (172), Expect = 4e-33 Identities = 170/225 (76%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || |||||||| ||||| || ||||| | | || || || | ||| ||||| Sbjct 64315 GATCTGGAAGCCGTAGAAGCATCGGGCCTCAGCTGCTTGTACCTCGGAACTGAATCGCTC 64256 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||| || || || ||||| || ||||| || || || ||||| || ||||| |||| Sbjct 64255 GACAAGGTTCTCATTGACAATTCCGTCTGAAGCAGCAAAGAAGGCGAGGACGTGGCTGAT 64196 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| ||||||||||||||||||| || ||||| ||| || |||||||||||||||| Sbjct 64195 GAAGTGGCGCTCGTTGTCGTTCAGCCGGTTATCCCAATCGTGCATGTCCTTGGACAGGTC 64136 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||| || ||||||| ||||| ||||| || || |||||||| Sbjct 64135 GATCTCTTCAGCGGTCCAGAACGATGCCTCTGCCTTCTTGTACAT 64091 Score = 149 bits (164), Expect = 6e-31 Identities = 347/516 (67%), Gaps = 7/516 (1%) Strand=Plus/Minus Query 132627 CTCaaaaaaa-TTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGG 132685 |||| || || || || || || | || |||||| | |||||| || |||||||| | Sbjct 64987 CTCACAAGAAGTTCGTCTTCCCTTGCAGAGAAATGTTCTCCATAAAGTCGAAGGGGTTCG 64928 Query 132686 CTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGA--CGAGCAGCCTGTCGGCCACGAACTC 132743 | ||||||||||| | | || | ||| | || || | |||||| || ||||| Sbjct 64927 TCGCATTGTAGTGCTTCTCGTT-ACCAAG-CGAAACCAGTAGACGGTCGGCAACAAACTC 64870 Query 132744 GATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 |||||| || | ||| | || | || | ||| || ||||| || ||||| Sbjct 64869 GATGTACTGAGTCATCAGCCGGGCGTTCATGCCGATCAGTGATACTGGCAGAGCATCGGT 64810 Query 132804 GAG-AAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 || ||||| ||| || |||| ||||| ||| | | |||| | || | | | Sbjct 64809 CAGGAAAGC-TTGTTCAATGGTCACCGCCTCGCTAATGATTCTCAGCACAGTCTCGGGAT 64751 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 || || | | | || ||||| || ||| ||||||||| |||| ||| |||| Sbjct 64750 GTGGGCGCTTCTTGAGGTGGCCGAACAGCAGGCAGGCAAAGTCGGTGTGCAGGCCTTCGT 64691 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | | ||| || || || ||| |||| ||||||||| || ||||| || || |||| Sbjct 64690 CTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCCGGGCATCAGACCGCGCTTCTTCAGCC 64631 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 |||| |||| || || ||| || ||||||| |||||||||||| || || || | || Sbjct 64630 AAAAGATGGACGCAAACGAGCCAGAGAAGAAGATGCCCTCGACGGCAGCAAAGGCAATCA 64571 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 ||||||| | || || | | || | |||||| || | ||||| ||||| |||| Sbjct 64570 GGCGCTCAGCAAATGTCGACTGGGTGTCGCTGATCCATCGGATAGCCCACTCGGCTTTTT 64511 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 |||||| || || || |||||||||| |||| Sbjct 64510 GCTTGACGACGGGAATGGTCTCGATGGCGTCGAACA 64475 >seq32 Length=118755 Score = 136 bits (150), Expect = 4e-27 Identities = 148/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| ||||| || || ||| |||| ||||| | || Sbjct 111472 ATGCAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAATCTTCC 111413 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| |||||| | |||| Sbjct 111412 GACACCATCGACAATG--TCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACC 111355 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 111354 AACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACTCTGAGCGACTACA 111295 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 111294 ACATCCAGAAGGA 111282 >seq142 Length=44629 Score = 132 bits (146), Expect = 5e-26 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| |||||| || | Sbjct 44496 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCG 44437 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 44436 GACACTATCGACAACG--TCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 44379 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| || || ||||| || |||| ||||| ||| |||||||| Sbjct 44378 AACAGCGCCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGCACTCTCTCCGACTACA 44319 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 | || || ||||| |||| |||||| | || || Sbjct 44318 ATATTCAGAAGGAGTCGACTCTGCATCTTGTTCT 44285 >seq4 Length=308026 Score = 116 bits (128), Expect = 4e-21 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| |||| || ||| || || Sbjct 60335 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCCTCC 60394 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 60395 GACACCATCGACAATG--TCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 60452 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| ||||| ||||| || || | || || || ||||||| Sbjct 60453 AACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTTTCGGACTACA 60512 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | || || || | ||||| || Sbjct 60513 ACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTTCG 60549 >seq25 Length=137175 Score = 107 bits (118), Expect = 2e-18 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 38255 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA 38314 ||| || || ||||| || || || |||||| |||| || ||| || |||||| | | | Sbjct 84239 CGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGA 84180 Query 38315 -AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 |||| | |||| || |||| ||||| ||||| ||||| | |||||||| || || Sbjct 84179 CAACG--TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTG 84122 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || || ||| ||| ||||||||||| ||| Sbjct 84121 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAG 84062 Query 38433 GA 38434 || Sbjct 84061 GA 84060 >seq119 Length=54761 Score = 102 bits (112), Expect = 8e-17 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| || ||| || |||||| | | | || | | |||| Sbjct 54576 ACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCCGACACCATTGACAATG--TCAAGA 54633 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| ||||| ||||| | |||||||| || || |||| ||| |||| Sbjct 54634 CCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGCCTGATTTTCGCCGGCA 54693 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || |||| ||||| || ||||||||||||||| ||||| Sbjct 54694 AGCAGCTTGAAGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGA 54742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168004593280