Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq23 163 4e-35 seq35 95.1 2e-14 >seq23 Length=147171 Score = 163 bits (180), Expect = 4e-35 Identities = 525/807 (65%), Gaps = 21/807 (3%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| | ||||| ||||| |||||||||| || ||| || || ||| | |||| Sbjct 139032 ACATGCTGATGCGTGTCGCCGTCGGTATCCACGGCCGAGACATCGACGCTGCCATCGAGA 139091 Query 111679 CATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 ||||| || |||||| | ||| |||| || || | || || ||||||||||| Sbjct 139092 CATACAACCTGATGTCGGAGAAGTAC-TTCACACATGCCTCGCCCACTCTCTTCAACGCC 139150 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797 || ||||| | || || |||| || ||||| | | | ||||| || || ||| Sbjct 139151 GGCACACCCAACCCTCAGCTGTCTTCGTGCTTCCTGGTCACCATGAAGGACGACTCCATC 139210 Query 111798 AATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATC 111857 | || || |||| ||| |||| || ||| || ||| || |||||||| Sbjct 139211 GAAGGTATCTACGACACCCTCAAGACCTGCGCCATGATAAGCAAGACTGCCGGTGGTATT 139270 Query 111858 GGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGAGGT-ACAAATGGTC 111915 || | |||| || || | | || | ||| || | | || || || || Sbjct 139271 GGTCTCAACATTCACTGCATCCGTGGCACT--GGCTCCTACATCGCGGGCACCAACGGCT 139328 Query 111916 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACC 111975 || | || ||| | || ||||| || || | ||| ||| || || || || ||| Sbjct 139329 TCTCCAACGGGATTGTGCCCATGCTGCGAGTCTACAACAACACCGCTCGATACGTCGACC 139388 Query 111976 AAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGG 112029 ||| ||| ||||| | || | | || |||| ||||||| |||||| | | Sbjct 139389 AAGGTGGCAACAAGCGTCCC---GGCGCCTTTGCCATCTACGTTGAGCCCTGGCACTCTG 139445 Query 112030 ATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCG 112089 | || | |||||||| || | || ||||| || | ||||||| || || | Sbjct 139446 ACGTCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGAGCTCGAG 139505 Query 112090 ATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA 112149 | ||||||| ||||||||||||||| || | |||||||||||||| || ||| ||| Sbjct 139506 AGCTCTTCTACGCTCTCTGGATTCCCGACTTGTTCATGAAGAGAGTCGAACAGAACGGCG 139565 Query 112150 ATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG---GGTGAGG 112206 | |||||||| | || || || || ||||||||| |||| |||| || |||| Sbjct 139566 AGTGGTCTCTGATGTGCCCCAACGAGTGCCCCGGTCTCGCCGA---CGTGTACGGCGAGG 139622 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAG 112266 |||| || ||||||||| ||||||||| | ||| | ||| | || | | Sbjct 139623 AGTTCGAGGCCCTCTACGAGAAGTACGAGAAGGAAGGCAAGGCCCGTCGCACCATCAAGG 139682 Query 112267 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326 || | | ||| | || || ||| || | || ||||||||||| | || | |||| Sbjct 139683 CTCAAAAGCTCTGGTACGCCATCCTCGAGGCCCAGACCGAGACTGGCAATCCCTTCATGC 139742 Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386 | ||||| ||||| |||| ||| || || ||||| | ||| |||||| | | Sbjct 139743 TCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAAGTGCT 139802 Query 112387 CCAACCTCTGTACAGAAATCTTGGAAT 112413 ||||| | || || || ||| | |||| Sbjct 139803 CCAACTTGTGCACTGAGATCATCGAAT 139829 >seq35 Length=115666 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||||||||| || | || ||||| || ||||| |||||||||||||| || || Sbjct 64558 TTTGCTGAGCGCCTGATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTT- 64616 Query 102234 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || | |||||| |||||||| ||||| ||||| || || |||||| || || Sbjct 64617 TGCGTCCATCTTTTGGCTGAAGAAGCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGA 64676 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| || || ||||| || || ||| || ||||| Sbjct 64677 GCTGATTAGCCGAGACGAAGGCCTGCACACCGACTTTGC 64715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736448632240