Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq32 87.8 1e-12 seq142 86.0 5e-12 seq25 82.4 6e-11 >seq4 Length=308026 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || || ||| | || | || || | |||| Sbjct 60537 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCATCCTCGAGCTGC 60478 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| |||||||| |||| |||| |||||||||||| ||||| Sbjct 60477 TTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 60418 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||||||||| | || || || || ||||| Sbjct 60417 GTCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTACCCGTG 60358 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 60357 AGGGTCTTGACGAAAATCTGCAT 60335 >seq32 Length=118755 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || ||| | ||| |||| || | |||| Sbjct 111270 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCGAGCTGC 111329 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| |||||||| |||| ||||| ||||||||||| ||||| Sbjct 111330 TTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCTTGGATCTTG 111389 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | || ||||| | ||||| || || || || Sbjct 111390 GTCTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTAATAGTCTTGCCGGTG 111449 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGT 48771 | ||| ||||| || || ||||| |||| Sbjct 111450 AGAGTCTTTACGAAGATTTGCATGGTGT 111477 >seq142 Length=44629 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||||||||| || || ||| | || |||| || | |||||| ||||| || Sbjct 44305 CTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCGTCTTCAAGCTGCTTTCCGGCGAA 44364 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || |||||||| |||| |||| |||||||||||| ||||| || || Sbjct 44365 GATGAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTT 44424 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | ||| || || | || || || || || |||| || || || Sbjct 44425 GTCGATAGTGTCCGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 44484 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 44485 GAAGATCTGCAT 44496 >seq25 Length=137175 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||| || || |||| |||| || | |||| Sbjct 84048 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGCGTTCGGCCGTCCTCGAGCTGC 84107 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || ||||| || ||||| || ||||| |||| |||| |||||||||||| Sbjct 84108 TTGCCGGCGAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTC 84157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934039066741