Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq23 298 1e-75 seq35 129 1e-24 >seq23 Length=147171 Score = 298 bits (330), Expect = 1e-75 Identities = 1098/1702 (65%), Gaps = 57/1702 (3%) Strand=Plus/Minus Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||| ||||||||||||||||| | | || |||| |||||| || |||||| ||| | Sbjct 140632 GTCGGCGGCCATGTCTATGATGACCTTTTGCGAGATCTCCCAGACCGTCTTGTAGAGAGC 140573 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAG 212848 |||| | || || | |||||| | ||| || | || || | ||| ||| | | Sbjct 140572 CTTGATGCGGTCAGGAATGCCGGGCACGTTTTGAATCGAGCCACCGTGGGCAATGATACG 140513 Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG--- 212905 | | ||| | ||||||||| || || || ||||| | || |||| | Sbjct 140512 GTTCTT---CATCTGCTCGTTCCACAGACCT-TG--CTCCACGAGCTCACGCAGGAGCCA 140459 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | ||||| || || | || || | | ||||| ||| ||||| Sbjct 140458 AGGGTTGACGACTTGGAACTCGCCGGCCAGGACTCGGCGGGTGTAAAGGTTGCTGGTGTA 140399 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||| || |||||||| | || ||| || |||||||| || Sbjct 140398 AGGCTCGAAGCACTCGTTGAAGCCAAGAATCTGAGAGGTCGAGGCAGTCGGCATGGGTGC 140339 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 | ||||| ||| | | ||||| | |||| || ||||| |||||||| Sbjct 140338 GAGGAGGAGCGAGTTGCGGAGGCCGTGGGTGGCGATCTTCTGCTTGAGCTCGGCCCAGTC 140279 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| || | || || | ||| ||| | ||| | || | ||| || Sbjct 140278 CCAGAGGCTG--CTGG-----GTG--TAACGCCCCAAAAGTCGTATTGGAGCTCGCCCTT 140228 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 ||| | |||||||| ||| | ||||| ||| |||| || | |||||| || Sbjct 140227 GCTGGCAGGGCTGCCGGCGTATGTCTCGTAGGTGCCCAGCTCAGCAGCAATCTCGCACGA 140168 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || || |||| |||||| || ||||| || | |||| |||||||||||||| Sbjct 140167 GCGCTCGAGAGCGGCGTGGTAGATAGTCTCAAAGATTTGAATGTTAAGCTTCTTGGCCTC 140108 Query 213266 TGGGGACGTGAAGGGCATCATC--ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 |||| || | |||| ||| ||| ||| |||| || || || | ||| ||| Sbjct 140107 -GGGGCTGTCGAAAGCAT-ATCCCATGATCATGAAGGCATCGGCGAGACCGTTGACACCG 140050 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGG-AGCACTCCTCCAAGGGGTAAAAGTT 213382 || || ||||| | ||| | | ||| ||||| ||| ||| | |||||| |||| Sbjct 140049 ATACCAATGGGACGGTGGCGGAAGTTGGACTTCTTAGC-CTCGGGAACGGGGTAGTAGTT 139991 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC---ATGG-GC--CAG 213436 | ||||||||||||||| | ||||| | | | || |||||||| |||| || | Sbjct 139990 GATGTCGATGATCTTGTTCAAGTTGCCGCAGACAACCTTGGTGACCTCATGGAGCTTCTT 139931 Query 213437 GTACTCGTGATTGAACACGTAGCCCC------CGTCCTGCACAAACTCAGGCAGGGCGAT 213490 | | |||| || || | ||| | | | || ||||| || Sbjct 139930 GAAGTCGTATGTGCGGGTGTTGGTTTGGTTGTCGTAGTTGATGTAGGAGGGGAGGGCCAT 139871 Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCA 213550 ||| |||| |||||| || || ||||| | || | |||| || |||||||| ||||| Sbjct 139870 GCTAGCCAAGTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATCTCAGTGCA 139811 Query 213551 CAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATC 213610 || |||| ||| |||||| || ||||||| ||||| ||||| |||||||| || Sbjct 139810 CAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTC 139751 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAG 213670 ||||||||||||| |||| || ||||| ||||| | | || || | |||||| Sbjct 139750 CTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAG 139691 Query 213671 GTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAG 213730 | ||||||| || | | | || | | |||||||| |||||||| Sbjct 139690 CTTTTGAGCCTTGATGGTGCGACGGGCCTTGCCTTCCTT---CTCGTACTTCTCGTAGAG 139634 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAG 213790 | | ||| || | ||| | || | | || || || || ||| ||||| || Sbjct 139633 GGCCTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATCAG 139574 Query 213791 GCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 ||| || |||| | | |||||||| |||||||| ||| || | ||| || ||| Sbjct 139573 AGACCACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGCGTA 139514 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||| || || | | | ||| ||| || ||| ||||| || || || || || Sbjct 139513 GAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTC 139454 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CC 213967 |||| ||| | |||||| ||||| | |||||||||||||||||| || | |||| || Sbjct 139453 GAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCCGGGACGCTTGTTGCC 139394 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 || ||||| || | || ||||| ||| ||||| | ||| || | |||||| Sbjct 139393 ACCTTGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATCCCGTT 139334 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAG 214087 ||| |||||||| ||||| || || ||||| | | | | | | | ||| ||| Sbjct 139333 GGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCCAGTGCCACGGATGCAGTGAATGTTGAG 139274 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || || |||||||| |||| |||||||||||| | | | || || ||| || Sbjct 139273 ACCAATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACC 139214 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207 | ||| ||| || | | | | | || |||||| || ||||| || ||| | Sbjct 139213 TTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTGGGTGT 139154 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 ||| | |||||| || ||||| |||||| | | |||| | || | || |||| Sbjct 139153 GCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAAGTACTTCTCCGACATCAGGTTGTA 139094 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCAT 214327 ||||| | | | | | |||||| | |||||| | ||| | ||||||||| Sbjct 139093 TGTCTCGATGGCAGCGTCGATGTCTCGGCCGTGGATACCGACGGCGACACGCATCAGCAT 139034 Query 214328 GTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG------AGCAGGTAGGAGCGCTC 214381 ||| || |||| ||| | |||| ||| ||| |||||||| || | || Sbjct 139033 GTGTTGCGGCCGCTC--AGCAACCTT----GCCATTGATGCGCAGCAGGTATGATCTTTC 138980 Query 214382 CAGAGTCTTGAACCCAAAGTAG 214403 ||||||||||| ||||||||| Sbjct 138979 GAGAGTCTTGAAGCCAAAGTAG 138958 >seq35 Length=115666 Score = 129 bits (142), Expect = 1e-24 Identities = 344/516 (67%), Gaps = 20/516 (4%) Strand=Plus/Minus Query 47860 CTCA-AAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGG 47918 |||| |||||||| |||||||| | || || ||||||||||| ||| ||||||||| | Sbjct 64987 CTCACAAGAAGTTCGTCTTCCCTTGCAGAGAAATGTTCTCCATAAAGTCGAAGGGGTTCG 64928 Query 47919 GTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTC 47976 | || || | | || | || | | |||| || | || || || |||| Sbjct 64927 TCGCATTGTAGTGCTTCTCGTTA--CCAAGCGAAACCAGTAGACGGTCGGCAACAAACTC 64870 Query 47977 GATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGT 48036 |||||| | | ||| || | ||||||||| || || || || |||| ||| | || Sbjct 64869 GATGTACTGAGTCATCAGCCGGGCGTTCATGCCGATCAGTGATACTGGCAGAGCATCGGT 64810 Query 48037 GAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT---CTGCTTAA-CGCGGGACT 48092 || || | | || || ||| || || | | || | || | | ||||| | Sbjct 64809 CAGGAAAGCTTGTTCAATGGTCACCGCCTCGCTAATGATTCTCAGCACAGTCTCGGGA-T 64751 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 || | | || ||| ||||| | | | |||| |||||||||||| |||||| || Sbjct 64750 GTGGGCGCTTCTTG---AGGTG---GCCGAACAGCAGGCAGGCAAAGTCGGTGTGCAGGC 64697 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 ||||||| ||||| || ||| | || |||||| || || ||||| | || | || | Sbjct 64696 CTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCCGGGCATCAGACCGCGCTTCT 64637 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | ||||| || || | ||| || ||||||||||||||||||||||| || || || || | Sbjct 64636 TCAGCCAAAAGATGGACGCAAACGAGCCAGAGAAGAAGATGCCCTCGACGGCAGCAAAGG 64577 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA--GGAAAGCGCCCAGTC 48330 | | || | ||| | || | | | |||| |||||| ||| | ||||| || Sbjct 64576 CAATCAGGCGCTCAGCAAATGTCGACTGGGTGTCGCTGATCCATCGGATA--GCCCACTC 64519 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 || || | ||||| | || || ||||| ||||| Sbjct 64518 GGCTTTTTGCTTGACGACGGGAATGGTCTCGATGGC 64483 Score = 120 bits (132), Expect = 6e-22 Identities = 162/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||||||| ||||||||| | ||||||| | || || || | ||||| ||| Sbjct 64315 GATCTGGAAGCCGTAGAAGCATCGGGCCTCAGCTGCTTGTACCTCGGAACTGAATCGCTC 64256 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 | || ||||||||||| || || |||||||||||||||||||| ||||| || | | Sbjct 64255 GACAAGGTTCTCATTGACAATTCCGTCTGAAGCAGCAAAGAAGGCGAGGACGTGGCTGAT 64196 Query 48574 GAAATGGCGCTCGTTGTGGGTGA---GAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||| ||||||||||||| | | | | || ||| | || | ||| ||| |||||| Sbjct 64195 GAAGTGGCGCTCGTTGTCGTTCAGCCGGTTATCCCAATCGTGCATGTCCTTGGACAGGTC 64136 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | ||||| | |||||||| || || ||| || |||||||| Sbjct 64135 GATCTCTTCAGCGGTCCAGAACGATGCCTCTGCCTTCTTGTACAT 64091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931523868929280