Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq23 282 8e-71 seq35 161 2e-34 >seq23 Length=147171 Score = 282 bits (312), Expect = 8e-71 Identities = 633/943 (67%), Gaps = 37/943 (4%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | ||| |||| ||| || || || ||||| || | || | |||||| Sbjct 139878 AGGGCCATGCTAGCCAAGTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATC 139819 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || || | |||| |||||||||||| || |||| || || || |||||||| ||| Sbjct 139818 TCAGTGCACAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTG 139759 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 |||||||||||||||||||| |||||| ||||||||| ||| ||| | || || | Sbjct 139758 GCAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCG 139699 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCA 221935 | |||||| | | || | | || | |||| || | |||| ||| || Sbjct 139698 TACCAGAGCTTTTGAGCCTTGATGGTGCGACGGGCCTTGCCTTCCTTCTCGTACTTCTC- 139640 Query 221936 TACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG 221995 ||| || || | | |||| || |||||| | ||| | || || || ||| | Sbjct 139639 ------GTAGAGGGCCT--CGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCACTCG 139588 Query 221996 GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGG 222055 ||| ||||||||| ||| | ||| | || ||| |||| |||||| | ||| || Sbjct 139587 TTGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGA 139528 Query 222056 ATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTC 222115 ||||| || || | ||||| |||| | || ||||||| ||||| ||| || | Sbjct 139527 ATCCAGAGAGCGTAGAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 139468 Query 222116 AGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCG 222175 || || | ||||| || | ||||| |||||| ||||| | |||| ||| | |||||| Sbjct 139467 AGGTCGAGGAACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCCG 139408 Query 222176 GGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGC----GTTGAAGATGCGAAG 222231 || |||||||||||||| || || || | || || | |||| ||| || || Sbjct 139407 GGACGCTTGTTGCCACCTTGGTCGACG----TATCGAGCGGTGTTGTTGTAGACTCGCAG 139352 Query 222232 GGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCT 222291 | || || | |||||||| |||||||||||| ||||| | || | | | Sbjct 139351 CATGGGCACAATCCCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCCAGTGCCACG 139292 Query 222292 CAGGTTACTG---GCAGACATGCCGATACCACCGGC-GTGTTTCGAGATCATGGCGCAGC 222347 | | | || | || | || ||||||||||| || || | |||||||||||| Sbjct 139291 GATGC-AGTGAATGTTGAGA--CCAATACCACCGGCAGTCTTGCTT-ATCATGGCGCAGG 139236 Query 222348 TCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAG 222407 ||||||| ||||| ||| || || || ||||| ||||| | | | | ||| || || | Sbjct 139235 TCTTGAGGGTGTCGTAGATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGCACG 139176 Query 222408 ACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGT 222467 | |||| ||||| |||| | | |||||| || || ||||| ||| ||||| |||| Sbjct 139175 AAGACAGCTGAGGGTTGGGTGTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTGAAGT 139116 Query 222468 AGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCT 222527 | | |||||||| | ||| ||||| | | | | |||||| ||||| || Sbjct 139115 ACTTCTCCGACATCAGGTTGTATGTCTCGATGGCAGCGTCGATGTCTCGGCCGTGGATAC 139056 Query 222528 GCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTG---GAGCTGG 222584 | |||| | ||| ||||| || |||| || ||| | ||||| | || Sbjct 139055 CGACGGCGACACGCATCAGCATGTGTTGCGGCCGCT---CAGCAACCTTGCCATTGATGC 138999 Query 222585 AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 |||||||| ||| |||| ||||||||||| ||||||||||| Sbjct 138998 GCAGCAGGTATGATCTTTCGAGAGTCTTGAAGCCAAAGTAGTT 138956 >seq35 Length=115666 Score = 161 bits (178), Expect = 2e-34 Identities = 343/518 (66%), Gaps = 15/518 (3%) Strand=Plus/Plus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||| | ||||||||| ||| ||| | ||||| || || |||||| || Sbjct 64474 CTGTTCGACGCCATCGAGACCATTCCCGTCGTCAAGCAAAAAGCCGAGTGGGCTATCCGA 64533 Query 25846 TGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTG 25902 ||||||| ||| |||| | || |||| ||||| ||| | ||||||||||| || Sbjct 64534 TGGATCAGCGACACCCAGT---CGACATTTGCTGAGCGCCTGATTGCCTTTGCTGCCGTC 64590 Query 25903 GAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC 25962 ||||||||||| ||| || ||||||||| ||||||| ||||| ||| || || Sbjct 64591 GAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGCTGAAGAAGCGCGGTCTG 64650 Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 |||||||| ||| ||| || || ||||| || ||| | ||||| || || |||| || Sbjct 64651 ATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACGAAGGCCTGCACACCGAC 64710 Query 26023 TTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA---ACCTTCTCAAGAGACCGTC 26079 |||||||||||||| | | |||||| ||| | || || || ||||| || Sbjct 64711 TTTGCCTGCCTGCTGTTC---GGCCAC---CTCAAGAAGCGCCCACATCCCGAGACTGTG 64764 Query 26080 TACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNN 26139 || ||||| | ||||| ||| || || | | || | Sbjct 64765 CTGAGAATCATTAGCGAGGCGGTGACCATTGAACAAGCTTTCCTGACCGATGCTCTGCCA 64824 Query 26140 NNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGAC 26199 | ||||||||| | | || |||| || ||||| |||| ||| |||||| Sbjct 64825 GTATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTACATCGAGTTTGTTGCCGAC 64884 Query 26200 CATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTT 26259 | ||| ||| ||| || || | | ||||| | || | ||||| ||||||||| Sbjct 64885 CGTCTACTGGTTTCGCTTGGTAACGAGAAGCACTACAATGCGACGAACCCCTTCGACTTT 64944 Query 26260 ATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297 ||||| ||||| || || |||||||||| |||||||| Sbjct 64945 ATGGAGAACATTTCTCTGCAAGGGAAGACGAACTTCTT 64982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835894700480