Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq23 159 3e-34 seq25 111 1e-19 seq32 102 7e-17 seq142 96.9 3e-15 >seq23 Length=147171 Score = 159 bits (176), Expect = 3e-34 Identities = 464/701 (66%), Gaps = 19/701 (3%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||||| |||||||| | ||||| || ||||| |||| | ||| || | || Sbjct 139651 CTCGTACTTCTCGTAGAGGGCCTCGAACTCCTCGCCGTACACGTCGGCGAGACCGGGGCA 139592 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || ||||| || ||||| |||||||| | ||| | | ||||||||| || Sbjct 139591 CTCGTTGGGGCACATCAGAGACCACTCGCCGTTCTGTTCGACTCTCTTCATGAACAAGTC 139532 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC-CGAACCCATGTTAC 139480 |||||||| | |||| | | | || || || || | || | | || || | | Sbjct 139531 GGGAATCCAGAGAGCGTAGAAGAGCTCTCGAGC--TCGGACCTCCTCCTTGCCGTGGTTC 139474 Query 139481 GTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 || | | || ||||| || || ||||||| |||||| || || | |||||||| | Sbjct 139473 -TTGCGGAGGTCGAGGAACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAA 139415 Query 139539 TGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 ||||| || ||| |||||||| ||||||| ||| | | || ||| | || || Sbjct 139414 GGCGCCGGGACGCTTGTTGCCACCTTGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCG 139355 Query 139596 CAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCG 139652 || ||| ||| | | ||| | | |||||||||| |||| ||| | ||| Sbjct 139354 CAGCATGGGCACAATCCCGTTGGAGAAGCCGTTGGTGCCCGCGATGTAGGAGCCAGTGCC 139295 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 | |||| | || | |||| || || || ||| || ||| ||| | |||| Sbjct 139294 A---CGGATGCAGTGAATGTTGAGACCAATACCACCGGCAGTCTTGCTTATCATGGCGCA 139238 Query 139713 A-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 || | | || ||||| |||||| ||| |||||||| ||| |||||||| |||| Sbjct 139237 GGTCTTG-AGGGTGTCGTAGATACCTTCGATGGAGTCGTCCTTCATGGTGACCAGGAAGC 139179 Query 139772 ATGACGAAAGTTGCGG-TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 | || || || || || | | | |||||||| || ||||| || || || ||| Sbjct 139178 ACGAAGACAGCTGAGGGTTGGGT-GTGCCGGCGTTGAAGAGAGTGGGCGAGGCATGTGTG 139120 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | |||||||| | ||| || |||||||| | || || | |||||| Sbjct 139119 AAGTACTTCTCCGACATCAGGTTGTATGTCTCGATGGCAGCGTCGATGTCTCGGCCGTGG 139060 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 |||||||| | ||| ||||||||||| ||||| ||| || || ||| ||| | ||| Sbjct 139059 ATACCGACGGCGACACGCATCAGCATGTGTTGCGGCCGCTCAGCAACCTTGCCATTGATG 139000 Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 ||| || | || || |||||| |||||||||| Sbjct 138999 CGCAGCAGGTATGATCTTTCGAGAGTCTTGAAGCCAAAGTA 138959 >seq25 Length=137175 Score = 111 bits (122), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 || || || ||||| || || || || ||||| || || || ||||||| | || ||| Sbjct 84235 AAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCCTCCGACACCATTGACAAC 84176 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | || || || |||||||||||| || || || ||||| || ||||||||| ||||||| Sbjct 84175 GTCAAGACCAA-GATCCAAGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGATCTT 84117 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 ||||| || ||||| ||||| ||| | || ||||| ||||| || ||||| || Sbjct 84116 CGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCTCCGATTACAACATCCAGAAGGAGTC 84057 Query 24898 GACACTACAC 24907 || || ||| Sbjct 84056 CACCCTCCAC 84047 >seq32 Length=118755 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || ||||| ||||| | || || || ||||| || |||||||| ||||| || ||| Sbjct 111478 GACACCATGCAAATCTTCGTAAAGACTCTCACCGGCAAGACTATTACCCTCGAGGTCGAA 111419 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 | ||||||| | || | || || |||||||||||||| || || || || || Sbjct 111418 TCTTCCGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCG 111359 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||||| || ||||||| ||||| || ||||| ||||| Sbjct 111358 GACCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 111318 >seq142 Length=44629 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || |||||||| || || | Sbjct 44496 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCG 44437 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || |||||||| ||||| || || || ||||| || || Sbjct 44436 GACACTATCGACAACGTCAAGAC-CAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 44378 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || | ||||| ||||| || ||||| || || | | | || || || || Sbjct 44377 ACAGCGCCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGCACTCTCTCCGACTACAA 44318 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| ||||| ||||| || || |||| Sbjct 44317 TATTCAGAAGGAGTCGACTCTGCATCTTG 44289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893286606760