Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq35 152 8e-31 seq23 138 2e-26 seq136 132 8e-25 seq32 105 1e-16 >seq35 Length=115666 Score = 152 bits (168), Expect = 8e-31 Identities = 218/301 (72%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || || |||| || || ||| ||||||||||| || ||||||||| Sbjct 64697 CCTTCGTCTCGGCTAATCAGCTCATTCGAGAAGGTCAGGCCGGGCATCAGACCGCGCTTC 64638 Query 794401 TTGAGCCAAAAGATGGCACAGAAACT-GCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || ||||||||||||| || |||| ||| ||||| ||||||||||||||||| ||||| Sbjct 64637 TTCAGCCAAAAGATGG-ACGCAAACGAGCCAGAGAAGAAGATGCCCTCGACGGCAGCAAA 64579 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | | || ||||| ||||| || | || || | ||||||| || ||||| Sbjct 64578 GGCAATCAGGCGCTCAGCAAATGTCGACTGGGTGTC---GCTGATCCATCGGATAGCCCA 64522 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC-CTTCT 794578 ||| || |||| | | || ||| | || ||||||||| || |||| || | | Sbjct 64521 CTCGGCTTTTTGCTTGACGACGGGAATGGTCTCGATGGCGTCGAACAGGTACTCGCGTTG 64462 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | | ||| | || |||||||||||||| ||||| ||||| ||||||||||| | Sbjct 64461 CG-CAGAGTCGCGAATATATGTGTCGATGAGGAGAGAGTATGTCTCAGAGTGGATGTTCT 64403 Query 794639 C 794639 | Sbjct 64402 C 64402 Score = 105 bits (116), Expect = 1e-16 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| | | |||| ||||| |||| || || | ||||||||| Sbjct 64299 AAGCATCGGGCCTCAGCTGCTTGTACCTCGGAACTGAATCGCTCGACAAGGTTCTCATTG 64240 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || ||||| || || || |||||||||||||| |||| ||||| ||||||| | Sbjct 64239 ACAATTCCGTCTGAAGCAGCAAAGAAGGCGAGGACGTGGCTGATGAAGTGGCGCTCGTTG 64180 Query 796261 TCGCTGAGCGAG---ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 ||| | ||| | |||| | | | |||| | ||||||| ||| || |||||| Sbjct 64179 TCGTTCAGCCGGTTATCCCAATCGTGCATGTCCTTGGACAGGTCGATCTCTTCAGCGGTC 64120 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || || || ||||| ||||| |||||||| | ||| ||| Sbjct 64119 CAGAACGATGCCTCTGCCTTCTTGTACATTTGCCAGATC 64081 >seq23 Length=147171 Score = 138 bits (152), Expect = 2e-26 Identities = 186/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || || || |||| ||| |||| || ||||||||||||| |||||||| Sbjct 139389 TGGTCGACGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATCCCGTTGGAG 139330 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||||||||||||| | ||||| ||| | | | || | ||| | | || Sbjct 139329 AAGCCGTTGGTGCCCGCGATGTAGGAGCCAGTGCCACGGATGCAGTGAATGTTGAGACCA 139270 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | |||| || | ||||| | || || || |||||||| || ||| Sbjct 139269 ATACCACCGGCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCTTCG 139210 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || |||||| |||||||| | ||| |||||||| || || ||| | |||||| Sbjct 139209 ATGGAGTCGTCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTGGGTGTGCCG 139150 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || |||||||| ||||||| Sbjct 139149 GCGTTGAAGAGAGTGGGCG 139131 Score = 114 bits (126), Expect = 2e-19 Identities = 294/442 (67%), Gaps = 14/442 (3%) Strand=Plus/Minus Query 2071578 GACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGT 2071637 || || ||| ||||||| ||||| || | |||| || ||||||| ||||||| | Sbjct 139825 GATGATCTCAGTGCACAAGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTT 139766 Query 2071638 CAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGAC 2071697 ||||| | |||||||||| |||||| |||| || |||||| |||| ||| || Sbjct 139765 GCGGTTGGCAGCGTCCTTGTAGAGCATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAG 139706 Query 2071698 GATGGCCGACCAAA--TTTGGCGCGCGG--GCACCGA-GGTCCTCGCGCGGCCCTNNNNN 2071752 |||||| |||| | ||| | || | | ||| || ||| || | || | Sbjct 139705 GATGGCGTACCAGAGCTTTTGAGCCTTGATGGTGCGACGGGCCTTGC-CTTCCTTCTCGT 139647 Query 2071753 NNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCAC-TCGTGCAGGCCGGGCGC 2071811 ||||||| || || | |||||| ||| ||| || ||||| Sbjct 139646 ACTTCTCGT----AGAGGGCCTCGAACTCCTCGCCGTA-CACGTCGGCGAGACCGGGGCA 139592 Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGC-CAGTCACCACGCGGCGCATAAACAGGT 2071870 |||| ||||| | || ||||| |||||| | || | || | ||| |||| || Sbjct 139591 CTCGTTGGGGCACATCAGAGACCACTCGCCGTTCTGTT-CGACTCTCTTCATGAACAAGT 139533 Query 2071871 CGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCT 2071930 || |||| || |||| ||||| || || || ||| |||||||||||||||||||| Sbjct 139532 CGGGAATCCAGAGAGCGTAGAAGAGCTCTCGAGCTCGGACCTCCTCCTTGCCGTGGTTCT 139473 Query 2071931 TTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGG 2071990 | |||||||| | |||| || ||| | |||||| ||||| | |||| |||||||| Sbjct 139472 TGCGGAGGTCGAGGAACTCGAAGACGTCAGAGTGCCAGGGCTCAACGTAGATGGCAAAGG 139413 Query 2071991 CGCCCTTGCGCTTGCCGCCGCC 2072012 |||| |||||| ||| || Sbjct 139412 CGCCGGGACGCTTGTTGCCACC 139391 >seq136 Length=45425 Score = 132 bits (146), Expect = 8e-25 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| | ||||||||| || |||| ||||||| ||| ||| || || ||| Sbjct 6247 GTACTTGGTGACCGACTTGGTACCTTCCGAGATGGCGTGCTTGGACAGCTCTCCTGGCAG 6306 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || ||||| || |||||||| |||| ||| || |||||| || | Sbjct 6307 GATGAGTCGGACGGCTGTTTGGATCTCACGGGCAGAGATGGTCGACTTCTTGTT-GTAAG 6365 Query 1485591 -CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || | |||||| | ||||||| || | ||||| | ||| || ||||||| Sbjct 6366 AGGCGAGCTTGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCTTGGACGAAGGAGTTCA 6425 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| | ||| | ||||||||||| || ||||||||||||||||||||| || Sbjct 6426 GGATAGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGTGCACCTGCTTGAGGAC 6480 >seq32 Length=118755 Score = 105 bits (116), Expect = 1e-16 Identities = 170/240 (71%), Gaps = 12/240 (5%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| | |||||| || || |||| ||||||| | | || || ||| ||| Sbjct 38786 GTACTTGGTGACCGACTTGGTGCCTTCCGAGATGGCGTGCTTAGAGAGCTCTCCGGGCAG 38727 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGA-----TCGTGTTGCGCTTGTTA 1485585 ||| || || || || || ||||||||||| ||| || ||| || |||||| Sbjct 38726 GATGAGTCGGACTGCTGTTTGGATCTCGCG--TGCTGAAATGGTCGACTT---CTTGTT- 38673 Query 1485586 GTGCGCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 || || | | || | ||| || | ||||||| || | ||||| | || ||||| Sbjct 38672 GTACGAGGCGAGCTTGGAGGCTTCACCGGCGATGCGCTCAAAGATGTCTTGTACGAACGA 38613 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||| | ||| | ||| | ||||||||||| || ||||||||| || |||||||| || Sbjct 38612 GTTGAGGATGGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGTGTACTTGCTTGAGGAC 38553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916164810711713